RNA id: XM_034309684.1


Basic Information

Item Value
RNA id XM_034309684.1
length 4428
RNA type mRNA
GC content 0.45
exon number 3
gene id lrrc4ba
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1678312 ~ 1723798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaacaggacagtgaggatggaggatgttggTCATGAActcgctctctttttctctctgatggAAGGATTTTTGGTCTCCAGAAGCTAATCCTCAAGTAATTCCACTCGGAGAAGCTTCTCGAATCCACAGAGGACCTGTGAAGACAAAGGAGATACAATATGTGTACACGAGTCGTCTGTgtgtgaaacaaaaaacaaagaaaggacaAACAGGAGACAGTAGAGTAATTAATTCACCTGaggagacaaaaagaaagaaaaacaatgtttaacTAAACTGAAATCAACATTTGGTGGTGAAGTCCCAAAACGGATATTTACCTTCTGGAATAAGTTTAatacacactcttcacacttgGAATACAGGAAGGTCATGACCCAGATGCCATGCGGATCACCACGGTGACCGGCCTTCCTAACCCCGCCCCCTTCTTTTTCCTATTGGCCCAGCTGCTGTTTTGGCTCCTCCTCCTGGGCCAAGACATCGCAGGAGCCACGTCGACCTGCCCGACACCTTGCAGCTGCTCCAATCAAGCGAGCCGAGTGATCTGTACGAGACGAAACCTGGACGAGGTTCCAGAAAATATATCCAATAACACGCGATACCTCAACTTACAGGAGAACTCGATACAGGTGATAAGATCAGATACCTTCAAGCACTTGCGACATTTGGAGATCCTCCAGCTTTCCAAGAACCAGATTCGTCAGATTGAAGTTGGTGCATTCAATGGCCTCCCGAACCTCAATACTTTGGAACTGTTTGATAACCGTCTCACGCTGGTGCCATCGCAAGCGTTCGAATATCTCAGCAAGCTTCGGGAGCTCTGGCTTCGAAACAACCCCATCGAGACTCTGCCAGGCTATGCCTTCCACCGCGTGCCCTCACTTCGCCGTCTCGATCTGGGTGAGCTAAAAAAGCTGGACTACATTTCAGACGCTGCCTTTGTTGGTCTTGTCAATCTGCGCTACCTGAACCTGGGCATGTGCGGTCTGAAGGACATCCCCAACCTGACACCTCTGATCCGgctggaggagctggagctCTCTGGAAACAGGCTGGAAATCATAAGACCTGGATCATTCCAAGGCCTGGAGTCTTTGCGCAAACTATGGCTTATGCACTCCCAGATGTCTGTCATTGAACGCAATGCCTTTGATGACCTCAAGAGTCTGGAAGAGTTGAATCTatcccacaattccttgcactCGCTGCCCCATGACCTCTTCACCCCATTGCAGAAGCTGGAGAGAGTGCACCTCAACCACAATCCCTGGGTATGTAATTGTGATGTGCTATGGCTTAGCTGGTGGCTGAAAGAAACTGTACCAAGTAACACAACTTGCTGTGCCCGGTGCCATGCACCGCCCTACCTGAAGGGCAAATACATTGGAGAGCTGGACCAAAGCCACTTCACGTGCTACGCCCCTGTTATCGTCGAGCCTCCCACTGACCTCAATGTGACTGAAGGCATGGCTGCTGAACTCAAGTGCCGTACTGGAACCTCCATGACGTCTGTAAACTGGATTACACCCAATGGAACCCTGATGACCCATGGGTCATACCGCGTCCGAATCTCTGTGCTACATGATGGAACTCTGAATTTCACAAATGTCACCTTGCGCGACACTGGTCAGTACACCTGCATGGTGACCAACTCAGCTGGCAACACCACAGCAACGGCCGTCCTGAATGTCACCGCAGCAGACACCAGTGTCAATTACACCTATTTTACTACCGTCACTGTTGAAACTGTAGAATCCACAGGTGAAGAGGATTCAGCCCTACGTTCGATCAATGAGACCATTATCCACATCCCTGGTCCTACACCTTCTGGACGTCTCTGGCCTGATGCCATCCCAACAACAGCTTCCTCTCTGTCGGTTTTTGGATCCTCATCTTCTCCCCGAGCAACCAAACCCACATTTACTGTCTCAGTCTCTGAGCCGAGCTACCCCACTGGGCTGGATGACGTAATGAAGACTACCAAGATCATCATTGGCTGCTTTGTGGCTATCACCTTCATGGCAGCTGTCATGCTTGTGGTCTTCTACAAGCTGAGGAAGCAGCACCAGTTGCACAAGCACCACGGTCCAGTGAGAGCCATCGAGATTATCAATGTGGAGGATGAGATCGGAGCCAGCGCTAGTGTCCGAGGAAGCGGGATCTCTGGTGGTTCCACCATGCCCCAGGCCGGATCCAGTGGAGGAAGCCAGAGCCTGAGGCTGCATCACCCGGAGATTGTCAACCTGCCCAACCTGGCTCGGACGGACCACCTTAACCACTACTACAAGCCCCACCACTTCAACAACAACATGATGAGTTTGGGGCTCTCTGGAAGCTCTGGGATCGgcctcaacaacaacaacaacccttGTTCCCAGGCCCAACCCACGCCGATCTCCTGTTCCCAGGTGCCCGTCTCAGTGAGCTCCATTCCATCCTCAATGCCCCTGCCTACCCTTGGCATCCATGGATCACTCAAAGGCCTAATGGGTAAAGGGCAGAACCCTCAAATCGAGCCTTTACTCTTTAAGAGTGGCTCCAAGGAGAATGTTCAAGAGACTCAgatctgagaaagagagagtgagagagagtgtgtgagagtaagGGGATAGAGAGATAAAACAAGGGAGGGAAAAATAGGAAGATGGCATGAGGGAGACAGAAACAGATGAAGTGTACTGGCTGTTCAGCCCCCGTGGGTTTGTTGTTCTCAGGAGTAACGAGCGAGGTAGACCCAGCATTGTATGACATATTACCTACACAAGAAAAAGACGTTGCTGTGAATCACTACACTGCAAtgccagagacagagagggagggagaaaaagaaagaaagacagatgccGCAGCATTTAGATTAATGCTTACCGAACCAACGCTCACTCCGATCAATGTCAAAGTGACCATCAGCAGAGCAAATGCACTCACACGTCGTTCAATAAGGTATCAATTTAATACACGATTAGTAATTATGTGCCAAACTTGCACAGATACGTGCCAAAGCAAAATCTTTGTGCATCAGCATTGCGAAGTATATCCACAGATGCTATCTCACTGAAAAGTTTAAGAACAATATATCAGACATGTCAGTGTGCATCGTTACAGCTAAGATGCTGTAAGAAAATAACTCCACACACAGTATGCAGTAAATGAGACGTTTATAAATTCGAGAGcaaaatttttatatatgtatatcgaACATACAGATGTGTTCTGAATATGTATATACAACACAAGCAGCTGAAAGTATTATATTGTGGGTGTAGGAGTgccaagaaaagaaaacaataggTCATGATTATAATTTGTTAGGTGTAGAGGTTTGCAGTAGCATTCAGGGTCGATGGATTAGACAGACCAGCACTGTGTCGAGGGCTTGTGTTTTGTTCTGATGGACTCTGCCATATTCTcgctttctctgtctttttaacACCTCGAGGtggaaggaagagaaagagagagcattcttttgtttctttttcttttctttttatttgaagGAACCTAAAGGGCAAAAGACAATTATctaaaaatctgaaaacaaaaaatgaaactgtGAAACTACacatgatatataaatatattttcattcagaGAAATAAATTATGAAgaatctttaattttttttttgttttctgaccGAAAGCCACGTCTTTGGAGGGATCAAGCGGCTGCACTTTGCCGACCTTTAGTGTGCTCACAAACGGCCGAAAGGGCCAAACGTTGGGATTTTTCTGGAGATCCTGGAGTTTCTGTTTTGACTCATTTTTAGTCCCTGAAACCCCTTTTCCCTTTTCTTGTTGCATTTTACTAACAGGGTTATTGGTAACGTGTCATGTTTTGTTCATCCTTACAGTGAAATTTATCCCAGATTCTTGTTGCAGTATGAACATTTTAGCATTACGAtgttgaattaaattgaattgtaCGGATTGAGGGGGGGAAATAAAATCACCAACACCAACAAACTATGCTAACCACAATGATAACACAGTAATAGGTAATGTAACTAAAagcaaaatgtgaatttttatcTAAATGCTGCtatacacagagagaaatagagacagaaagagggaaaagTTAAATTTTATGATGATTTGTCCCTCTATATTAAAGACGTGAATACAATTTTATGGCTATTAcatgtattataataattaaaattataattataaaaatgccTATATgtcagctttttttattttttattttaatttcagttccTTTTGTATCCAGAGGTGATGTTTGTATTTCATTGTGCTAGACGTGATTGTCACCACAGCGGATTAAATTTTTATCCCTAGcggaataaaaacaaaaaacaaaaaaatgacaccaaCTTCAGcaaacatcaaaacatcaaaatagaaaaaaaaaacacgaaggGCCTCTGATTGAGGCCTCTTTTCGACTCTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241234 lncRNA upstream 111693 1565356 ~ 1566629 (+) True G203672
TU241224 lncRNA upstream 145277 1522226 ~ 1533045 (+) True G203662
TU241222 lncRNA upstream 177529 1446989 ~ 1500793 (+) True G203660
TU241208 lncRNA upstream 237307 1362383 ~ 1441015 (+) True G203647
TU241190 lncRNA upstream 365333 1309397 ~ 1312989 (+) True G203635
TU241459 lncRNA downstream 48831 1772629 ~ 1867011 (+) False G203867
TU241477 lncRNA downstream 101180 1824978 ~ 1825293 (+) True G203885
TU241458 lncRNA downstream 116540 1840338 ~ 1842580 (+) True G203867
TU241499 lncRNA downstream 132625 1856423 ~ 1871560 (+) True G203898
TU241508 lncRNA downstream 182041 1905839 ~ 1922479 (+) True G203906
XM_034310285.1 mRNA upstream 20026 1631072 ~ 1658296 (+) True med25
XM_034310286.1 mRNA upstream 20240 1631072 ~ 1658082 (+) False med25
XM_034310287.1 mRNA upstream 20240 1631072 ~ 1658082 (+) False med25
XM_026916803.2 mRNA upstream 58348 1561524 ~ 1619974 (+) True syt3
XM_026916802.2 mRNA upstream 58348 1561524 ~ 1619974 (+) False syt3
XM_026916920.2 mRNA downstream 92513 1816311 ~ 1826068 (+) True emc10
XM_026916921.2 mRNA downstream 92513 1816311 ~ 1825905 (+) False emc10
XM_026917152.2 mRNA downstream 104873 1828671 ~ 1839338 (+) True zgc:195001
XM_034310013.1 mRNA downstream 130944 1854742 ~ 1870170 (+) True tbc1d17
XM_034310014.1 mRNA downstream 130944 1854742 ~ 1870170 (+) False tbc1d17
TU241220 other upstream 87247 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 321995 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 441710 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 627183 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 920264 753275 ~ 758058 (+) False fus
TU241504 other downstream 159277 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 431801 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1279874 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1468914 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 2242960 3966758 ~ 3986284 (+) True limd2

Expression Profile