RNA id: XM_034309887.1


Basic Information

Item Value
RNA id XM_034309887.1
length 2250
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC113527936
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16545641 ~ 16549914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAGCTCTTTATCTAAGCAAGTTaattttctttgtcattttataAGAGCAGAAATGAGCAACAAAATCTCTTtcttatacacatatatatctGCATCTGAGGCATCTCATTAGGTGAGCAGCTGGAACCTTGTAACGGAAACCCTAAACTTTTGTGTACTCTAAAAAGACTTCGGGGCCATGGGCAGGCTGGATGACGCTGCCAAGCGCAAGGTGGTGGAACTGCGTGAAGCGGGCCTGAGCTTCCGCAAGATCAAAGCTGTGCTGGAGCTGGAGAACATCAAAGTATCCGCACAGGCAATCTACCTCTTCCTGAAGGAGTTTCATGGAAGAGGCAGACAAAATGATGCTCCCGTGTCCGGGACTGGTGGATCTACAACAGCCTCGGGATCAAGGGACATGGGGCTAGGTGAACCGAGACACGGTGGCTGGAGCGAGCAGCAACTAAGGAATCTGCTTCGTGAGGCTGCCCATGTTGCTGGCTTCTCATCTCCTTCAGACTCCTCAGGGCAGAGTGGGGTAGCTCCAGAACCCAGGGGACACTCCTCTGGGGCAGGCCCAGCTAGCCAGGAGCCGCAGCAGGGAGACAGGAAGGACGAGGATGTCCGAATCGTAAGTGTTACCTCACTGGCACAGAATACCCACCATGATGCCGTTCAAACAGTACGCTCAGGGATTGGCTCAGGAGCAATGGCTGGAACGTTTTCAAGGAGAAGGTACACACCCTCACCAGCAAACCCAGTCCTTGTGGCTCGGAAAAGGCTCCTGGACAAGGCTTTGTTCCACAGAGCAAGGGTACGGGACAGTGGCCCTCAATCTGCCCAACAGACTGTGTCATTAGTGAGAAGAGATCAGTCATGTTTCCCATACTCAGAAGGAAGGAAGGTCATGTTACCTCAAACATCCTCCTTCAACCCCACATCTACCCGACCTGTGAGGGGACTACACCCAGGGACCAGTCTTTTTCGACAAGGATTTCAGCAACGGGCAAATATGCCCACCCGCTCGACAGAACAGTCACCCCGTGTTGGCATTCGGATTCCTGTGCCAGGCCAGTCAAGTACTGGGCCACAGAATGTCAGTTCGTCCGTAAGGGCCCAGGCTCCAACCAGTCAGCAGCAGTCCCCTCCAAGCCAGCAGAGCAATGTGGACACTGGAACACTAAGTGCATTGCAGGAACAGGTCAAGTCTCTGGCTTCTGAAGTGCGCAGTCTTGGATTAGCTCTCAGGATGATGGTAGAGCAGCAGGGCCGCCTGGAGAGGGAGCAGAGCCAGCAGACACAGGTCCAAAAGCAAATCCTCAGCACCTTGCAGAAACTAGCATCTAAACAGGGATCCTGTGCCTTTCAGCACAGTACAACTCCCACAATGCCCTCTTGCCCATTGTCCTCagcctcctacagtcagagcaCCTTCACTCCCAGCCAAGGCAACAGTTTGTGCAGCCAAGCCCAATCCAGGTACAACGAAATCGATGGATCCACTCTTGATAACATTGAGACATTTTCTCTAGATGGTCTCAGCTCTGCTGCTATAAATGGCTTTCAATCTTCTGACTCTCTTTCATTCAACCGGACACACTCACCACCAtttacacagtcacacacacagacattcacatCTGAGATAGTCAGCTACACGCAGCCTCACACAGACACTTATGAAGGGATGGACAGCAAGTCAGCGGAAATGGCCTCACCGAGCACAGACAGATCCTTTCAAGCCTGCAGGTCTTCAAGTCAGTCTTCTACTGAACCTATTTCTGTGCACGATGCCCACCTGACTATTGTCAaaatagaaaatgtttaaaagactGCAGAAATTTACGtatactgctgtgtttgttgtatTTCTGATCTTCCTTGCTGAATTTTGACAAATTTTAGAGTGAATCGTTTGATGGTACTGTAGCTTCAGCAATAGTAGACAAGTAGTGAAGATTTTTACACAACTTTTAATAATGGGCCAAACACCACACAGTACATTCACAAAGACATTTAAATATCTTAAAGTTGAAGTCATTCTTTTTATTCTccatttatgtgtgtttttactttaatgagcAAATACAAATTTAGTGTTATGAAGGCAAAATAAAACCTGACTGTTTTCTCGTATACATGACTATACAGTAAAGCCAAAGTGATTAATTTATGGTaagatttaaatgttaaaaatgcttTCCAACTGAAGTTACAGATTAGAAGTTTCAATAAGTATCAATTACAAACTGAAGAATTTTTGTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251138 lncRNA upstream 391403 16153616 ~ 16154250 (+) True G212030
TU251137 lncRNA upstream 392100 16152255 ~ 16153553 (+) True G212029
TU251141 lncRNA upstream 397111 16146379 ~ 16148542 (+) True G212033
TU250953 lncRNA upstream 705653 15839772 ~ 15840000 (+) True G211856
TU250935 lncRNA upstream 839652 15705749 ~ 15706001 (+) True G211838
TU251286 lncRNA downstream 26509 16576423 ~ 16616678 (+) True G212172
TU251291 lncRNA downstream 28500 16578414 ~ 16584331 (+) True G212174
XR_004579398.1 lncRNA downstream 62283 16612197 ~ 16613446 (+) True LOC117598846
TU251289 lncRNA downstream 62339 16612253 ~ 16613345 (+) False LOC117598846
XR_003402954.2 lncRNA downstream 97447 16647361 ~ 16649303 (+) True LOC113528544
XM_026916730.2 mRNA upstream 50951 16400754 ~ 16494702 (+) True LOC113528274
XM_026916731.1 mRNA upstream 92179 16400754 ~ 16453474 (+) False LOC113528274
XM_026916193.2 mRNA upstream 399327 16140442 ~ 16146326 (+) True LOC113527983
XM_026916859.2 mRNA upstream 718732 15822782 ~ 15826921 (+) True LOC113528350
XM_026916860.2 mRNA upstream 718732 15822782 ~ 15826921 (+) False LOC113528350
XM_026916115.2 mRNA downstream 229862 16779776 ~ 16808650 (+) True cfap70
XM_026916118.2 mRNA downstream 229862 16779776 ~ 16808650 (+) False cfap70
XM_026916116.2 mRNA downstream 229862 16779776 ~ 16808650 (+) False cfap70
XM_034310078.1 mRNA downstream 229862 16779776 ~ 16808650 (+) False cfap70
XM_034309870.1 mRNA downstream 258961 16808875 ~ 16819268 (+) False hmox2b
TU251142 other upstream 400269 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 576894 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 732322 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3052803 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4357064 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 537377 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1634105 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 2364812 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 2364812 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2594160 19144074 ~ 19145240 (+) True G213491

Expression Profile