RNA id: XM_026916148.2


Basic Information

Item Value
RNA id XM_026916148.2
length 2500
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC113527948
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21288480 ~ 21293794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAAGAGGATGCCGTGAAACAAGTTCTCTTCAGAGAGGAATCAACAGCACAGGAGTGCAAGACGTTTGGGGGAAAAGAGGGAACCAAATACGAAGAGAGCAGAAGAACTTCATTTTCTAGAGAATCAAGATGCAGAACTTTACACTCCTCCTGCTGACCTTGTTGGTGGACTTCCTGTTAGCCGCCTCTGTGAACCCGTTAGCATCTCTGCCTCCTGTCACAAAAACCCGCATCCGCTACATTGGTGTAACTGATGACTACGATGATGAAGCAACTCCCAAGCCCAATTCAAAAGTCCCTGACCAGACTGGGGCCACTACCACTCATTTTACCCCTCAGGAGTGTGAATATGACCCTTGTGTGGTTCCCAAGGTTCCGTGTTCTGTGATCGCTGCCGAAACTAAGTGCTACTGTCCTGGAATTACTGGTCCGGATGAGCTGCCTGCAGCTCCAGAGATCAAAGAGTTGAAACAAGGAGCATCTGGACTGGTGGAGGTTCATTGGTGTGCACCACTATCAACTGTCTCCTACTACAAAGTAATCACAGAAGAAGGCCACGAGCCCCAAGTTTTCAACAATTCATCCCGTAGTGGGTCAGTGCAGGGAGTAAAGTTTGGGTCACGAGTTTGTGTGGTGGCAGGGAATAGCGTCGGATTCAGCACTGAATCAGAAATATCATGTGCTCTCTTTGAGCCTCATAAGTCCAATCATGTCCTCCAGATGTCAGGAGCCATTGCTGGGGGTATCGGCCTTTTGTTGCTGGCCTTGGCGTTGGCTTTGGTGTTGCTGTGGAGACGGAGGAGGGGTAGGAAGAATGGGAGCATGGACGGTGAGGGACTACGAAATCCATCCTACACCACAAATGAAACACTGTGATTGGATGGGATGAAATTTAAGGTACTCATTTAGTGGTGTAAGAGGCCAGATGATTCTAGTTAGTAGGCTCTGGGGAAGGCTCTGGAGGGTGGGGAAAGCTTGAGGACAATACAGACAAATCACTACCAAGAACCGAAACAAGACAGACTTCGTACACTATGGACAAAACATTGGGATTGGACAAGGTCAAATTTGAAGTCCTACCAAAGGAAAGTTGGACTGCAAGTAAGGACATTAACCACGTGAGACTCACCAGTCATCATATAAGGAtattgctacagcatacagcaaACTATGTCCTTGACTTTGAAGACATTAGCGTCTATAGTTATCAGGTGCTAGTTAATACAAGTAGGGAGAATACTGAAAAGACTGACATCTTAGTTTGGGTTCTCAAGAGGATAGCTTAGACCAGGGGTTTTCAAACTTATCcacaaagaggccacacctgattccacttgcTAAATGAGTTCATCTTGGGTTCCAATCAACTAACAAGTGTGCCTCCtgcttggctggaatgaaagtCTGCAGCCACATCAGCCCTTTGAGGATAAGTTTGCGAACCCCTGGCTTAGACCTTGCATCCTCATATGAAGATATCACCCCTAACACGCAAAGACAcaacaggggtggacaaatcagtagcctagCCACCTGGGACAAGCAGATATTTTGTCCAAGctatttgatttttattctctcttgcTAGCTCATGCAATCATctcaagagagaaaataaagacactagcCAGACTCAAATAATACTCTTTAGGTGTGATGCGAGAACAGAACACCACAGCTTATAGCCGAAATGTTGCTAATTTCTTGTCAAGGTTGCAATCACAATGCACTACATTAGAAACTCATTAGTTGAGACTAATTAGTTGGAAATTAATCACttaactagcaaactagctcTCCATGTATGTTATTATATTGCATTAGCTACTACTTTTTATTCTCATCAGTTTGGTTTCTAGACAACCAAACCTTGGGAGTACACTGGAGTTTTTACTTGCACAGTGGGCTAGCGaattaatttatgatttgtccacccctgcacAGATTTCCATAGTTATCATAATACCTAGTACTAGTTACGACCATAGGTATAAGTTAATGGAAAGAAGGTCTCTGGAGGTTATGGACAAATTACACAGTCTGTGGAAGTACTCTTTTTAACCATTCTAAGAGACTCCATTCATTGGGAATTGATGCACTGTAATCTGACCATGAAACAAGCTAGAGGGCAATATGCCTGTGGAGACTCAATCAGGACATGAAGGACAAATCAACATGGActattaaacagaaaaaagagcagCAGAAACGAACAGAGAACTGAAATAACCTAATGTACCCCTGTGTTAGCGACTGAACACTTAGCAACCCTGCTGAGAGCTAGTCAACATGTTACATaagtttaaaaagcattttaaattatAGTCTTTTTTACAGATTAATTCCACTAATGGTGCTGGAACATCAAGGAAGCCTGGAGCTTCTGTAAGGTTTTATAGATAAAGATTTAGTAATTCAGATATTTGTAGTTgcatataaatgttaattattactcatgctaattcttttttttaataataaaatcatttcttctGGAAA

Function

GO:

id name namespace
GO:0048368 lateral mesoderm development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254255 lncRNA upstream 43695 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 102177 21185266 ~ 21186303 (+) True G214731
TU254221 lncRNA upstream 125176 21162900 ~ 21163304 (+) True G214723
TU254190 lncRNA upstream 130392 21144820 ~ 21158088 (+) False G214694
TU254189 lncRNA upstream 130392 21157282 ~ 21158088 (+) True G214694
XR_004579331.1 lncRNA downstream 63056 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA downstream 63056 21356850 ~ 21359059 (+) False LOC117598756
TU254313 lncRNA downstream 74230 21368024 ~ 21368228 (+) True G214798
TU254315 lncRNA downstream 112579 21406373 ~ 21464629 (+) True G214800
XR_004579359.1 lncRNA downstream 120668 21414462 ~ 21416513 (+) True LOC117598826
XM_026916778.2 mRNA upstream 61632 21206459 ~ 21226848 (+) True f8
XM_026916808.2 mRNA upstream 103630 21181413 ~ 21184850 (+) True tlr1
XM_026916765.2 mRNA upstream 206466 21047261 ~ 21082014 (+) False LOC113528291
XM_026916510.2 mRNA downstream 7849 21301643 ~ 21328754 (+) True sec24b
XM_034309781.1 mRNA downstream 47395 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA downstream 47503 21341297 ~ 21348917 (+) False hopx
XM_034309848.1 mRNA downstream 87986 21381780 ~ 21387087 (+) True LOC113527892
XM_034309849.1 mRNA downstream 87986 21381780 ~ 21387087 (+) False LOC113527892
XR_004579430.1 other upstream 1212072 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1307100 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1335194 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1378315 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1975262 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 46622 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 47453 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 47453 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 47453 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 47772 21341566 ~ 21348829 (+) False hopx

Expression Profile