RNA id: XM_026916158.2


Basic Information

Item Value
RNA id XM_026916158.2
length 2244
RNA type mRNA
GC content 0.42
exon number 3
gene id si:dkey-93n13.2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9104301 ~ 9120154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATTAATACCTTGTGCGCCCTATGTAGTGCCCTAAACATCTAACACTGAGCGGTTTGGGGTTCAGCCCTGGTGTGGAATAACGTCACAGCAAGCGAGTGCACTAGACCAGATATTCGCTATTATTTCACAAGAGGGAAAAGCAGTAAAATGACTAAATTAGACGAGTTAAACGTGTTCCTGAGTGAGAGACTGTCGGCGGCGGTGAATGAGATTCTCGACACAGTGAGCAGGATGATGCAGGAGTACGAGGAGGAAACGGCTCGGATACGCAAAGAGAACGACTATCTGAAGGAAATGTTAAAGCTCACAGGATGCACTTTTACACACACCAACCCGGGTGGGGTCCCTTCTGTGTCTCTTGGAAAACAAGATGACATCTCAAGCTTGCAGCAGGAATCAGAGCCCCAGGAGAGCCTGAGTCAACACCgaacagcaaagaaagaaaatgcaagCATAAAATCAGAACATCCCACCCCTCAGTACCCTGCACATTCTGACTCCGAGTCTGAAACCAGGCCGACAGAAGACACTGTGGAACCTCCCCAGTGCACCTCTCTGTTAAACTCACACGCTGTTGATCAAGACGTGATAGACTTTGATTTTCCCATAAAAGTCAAAGTCGAATCAATGAATATAGAGTCACATTCAGGCGATACCACAGACAATATGGATGCCAGCAACCAGAGCTGGTCTCCACAGAACTGGGATCTGTTTTCAGAAAGAAATTATCAGAATAGAGTACAACAAGGAGCTGGTGTGCATCCATACAGCACGGAAGGTCCTCGCTCTGCAGAAACCACAATTCAAAACCAGCCTGTAGAGTTCCAGGCAGCGTTCAGCTACACAAACAGGACCATATGCAATAACAGGCTGCACTGTACCAGCAGACACTGTGAACTTCAGAAAAGGACCACGTCGAAGTCGAGCCCTGTGTGGCAGTATTTCTCACTCAAAGAGGGTGACTGTAGTAAGGCGGTGTGTCTGATGTGCAAGGCGGTAATATCTCGTGGAGTTAAAGAGTACACAACATCAGCACTGTTAAAACACCTCCGTATGAAACATGgcaaatgttgatttttttttgtaattttgtactCTTGAATCAGTAGCTAGGTTTACGATTACGAAGAAAGAAAATAGGACAATGTGTATGAATGACACCAGTCTCTAATGTAGCAAATGAAAACTGTACTGACCAAATGTAGTTCATTTAATTTGCAATGCTCCTTTCACTTCATTTTGACTGATAATGCAGACCTGAGCTGGCTCAATACCATCCCATGGTTTTACTGAGATACACCTATAACAGATAAAAACAACCTAAATATGCATAAGTTCTTCACTGGTTATATACAGATTGGtggcaaattaaaggaaaaagagTTGGCTTTGACTGTTATGTATTAGGAGCATTTTGCTTGTATGGTTTGGGCAATGCAATACagagttcttctgactgatcacctttatcctatgatgaaacatttctatcctgacaggagtggtctcttctaggatgaccccgcccccatccaccagggctcactgaatggttcaatgggtttaaaataatgtaaatcatatgccaTGGCCCTCCCAGGCACCAGATCTCAACCAAACTGAACACTTCTGGGGGATTTTGGAGagatgtgttagacagcgctcttCATCACCATCTTTCAAACACCAACTGAGATAATCTTTTGGAAGagtggtgttcatccctccagtacggTTCCAGAGACGTGTAGAATCAATGCCAAGGTTCATTGCTGTTCTAGTGGCTCATGggggcccaacaccttactaagacactattattttttcctttaatttgtctcCAGTTTAACCAGTTTATAGTTCCATCTTGGGTATCTGAGGTGATGAGAAAACCTCACATAGTAAAAGTGATCTAGAATCAGTTTGTATTTTCAATACCCTAGTCAATATTGTTACTTGGATCAGAGAGGTTGTTCCTGGGTCGGCATTGTTACTGATACAATTCATTCATATCCAAAACATGTTCATAAcataaaagctaaaataatagctgcactgtatttttttttttcttcaaaagatGTTTAAGAGCAGGTGATTATAAAGTCCAGAAAGTTATAATGATAACCTTGACCCATGATATGtgaatttgtgttttgttttcatggtataattttaaaatgctttggACTTTGTAATTTGTTATTCCAGGAATAAACAGCAGTCATgtgggatgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246570 lncRNA downstream 1175 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 40794 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 73323 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 79318 9024761 ~ 9024983 (-) True G208151
TU246517 lncRNA downstream 97042 9007000 ~ 9007259 (-) True G208145
TU246658 lncRNA upstream 2042 9122196 ~ 9123881 (-) False LOC113527952
XR_004579419.1 lncRNA upstream 321832 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 321832 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 374469 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 609715 9729869 ~ 9731447 (-) False hoxb8a
XM_026916173.2 mRNA downstream 47858 9049773 ~ 9056443 (-) True sgf29
XM_026917054.2 mRNA downstream 55210 9045645 ~ 9049091 (-) False nfatc2ip
XM_034309673.1 mRNA downstream 55379 9045645 ~ 9048922 (-) True nfatc2ip
XM_026916525.2 mRNA downstream 60165 9032844 ~ 9044136 (-) False spns1
XM_026916523.2 mRNA downstream 60165 9032844 ~ 9044136 (-) True spns1
XM_026916153.2 mRNA upstream 1585 9121739 ~ 9142871 (-) True LOC113527952
XM_034309668.1 mRNA upstream 3498 9123652 ~ 9142871 (-) False LOC113527952
XM_026916931.2 mRNA upstream 24420 9144574 ~ 9152008 (-) True zgc:66443
XM_026916025.2 mRNA upstream 38222 9158376 ~ 9166233 (-) True LOC113527879
XM_026916769.2 mRNA upstream 48228 9168382 ~ 9184513 (-) True mvp
TU246334 other downstream 390983 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 819709 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 836663 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1673229 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 67366 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 76342 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 76342 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 289650 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 289650 9409804 ~ 9419584 (-) False prr15la

Expression Profile