Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916166.2 |
| length | 1380 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | LOC113527963 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 16538381 ~ 16545640 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K14325 | RNPS1; RNA-binding protein with serine-rich domain 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251459 | lncRNA | downstream | 41149 | 16478891 ~ 16497232 (-) | True | G212319 |
| XR_003402922.2 | lncRNA | downstream | 82534 | 16453560 ~ 16455847 (-) | True | LOC113528275 |
| TU251176 | lncRNA | downstream | 384811 | 16151738 ~ 16153570 (-) | False | LOC113528178 |
| TU251177 | lncRNA | downstream | 384867 | 16151105 ~ 16153514 (-) | False | LOC113528178 |
| TU251126 | lncRNA | downstream | 497982 | 16039756 ~ 16040399 (-) | True | G212018 |
| TU251473 | lncRNA | upstream | 27480 | 16573120 ~ 16573567 (-) | False | LOC113528039 |
| TU251546 | lncRNA | upstream | 135544 | 16681184 ~ 16690337 (-) | True | G212395 |
| TU251514 | lncRNA | upstream | 215592 | 16761232 ~ 16764671 (-) | True | LOC113527915 |
| TU251619 | lncRNA | upstream | 286328 | 16831968 ~ 16832219 (-) | True | G212463 |
| TU251855 | lncRNA | upstream | 632888 | 17178528 ~ 17179748 (-) | True | G212626 |
| XM_026916944.2 | mRNA | downstream | 1127 | 16501121 ~ 16537254 (-) | True | LOC113528411 |
| XM_026917098.2 | mRNA | downstream | 207842 | 16326885 ~ 16330539 (-) | True | sox8a |
| XM_026916252.2 | mRNA | downstream | 310939 | 16225651 ~ 16227442 (-) | True | LOC113528022 |
| XM_034310215.1 | mRNA | downstream | 334390 | 16151075 ~ 16203991 (-) | False | LOC113528178 |
| XM_026916292.2 | mRNA | upstream | 26905 | 16572545 ~ 16598688 (-) | True | LOC113528039 |
| XM_026916293.2 | mRNA | upstream | 69451 | 16615091 ~ 16634737 (-) | True | LOC113528041 |
| XM_034310191.1 | mRNA | upstream | 125505 | 16671145 ~ 16688599 (-) | True | LOC117595684 |
| XM_034309987.1 | mRNA | upstream | 125505 | 16671145 ~ 16677834 (-) | True | LOC113528100 |
| XM_026916431.2 | mRNA | upstream | 145870 | 16691510 ~ 16736757 (-) | True | abca3b |
| XR_003402969.1 | other | downstream | 1066469 | 15471777 ~ 15471912 (-) | True | LOC113528654 |
| XR_004579411.1 | other | downstream | 1848249 | 14678750 ~ 14690132 (-) | False | LOC113528445 |
| TU250141 | other | downstream | 2017406 | 14520277 ~ 14520975 (-) | True | G211151 |
| XR_004579449.1 | other | downstream | 2047606 | 14487821 ~ 14490775 (-) | True | LOC117599009 |
| XR_003402952.2 | other | downstream | 2508740 | 14020248 ~ 14029641 (-) | False | pecam1 |
| XR_004579443.1 | other | upstream | 747211 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579442.1 | other | upstream | 747211 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579437.1 | other | upstream | 747211 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579441.1 | other | upstream | 747211 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579439.1 | other | upstream | 747211 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
