RNA id: XM_026916168.2


Basic Information

Item Value
RNA id XM_026916168.2
length 1539
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113527964
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14875335 ~ 14878123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTTGACGCATGCGCACTGCTATGTAAATAACTGTAGTGGCTAAGCGCTAGTTGTTTGAAGTACTTAGGTAGCTAGACTTTTTAAAGTAAACCACTAACTATTATTGGTTTTTAGTAAAGCTATTTGGAAACGTAAGTGATAGGTGATTGTGTAGGGGGGTTAATAATCGTTGCAGCTGCGAGAACCTCTTTAATAAACCTCATGTTTACAACTTCGccctgctagctagctagctttcaGGCTAACGGTGCTAGCTGCCCAGGCAGTAGCAGGATGACAGGGTGCAAGTGCAGCTAATAATCAGGTGGTGGATTACAATTTCGGTGGATTACAATCAGATCCAGTGCCTAGAAAAGTGGAAATTGGTTAACCCTAGAGGAATTCGCCATGTTATCTGAAAACAGGAAACGGCAGCGTACTCaaggcgatgatgatgatgcactTCTGATGCCTCAGGCCAAAAGATCAAGCACAACACTCCAGTGTTCTGAGGGGAGCAGAGAAGCATGGGAGTCTGAGTCCTCCAGCAGTGACAGCAGTGGAGTCAGTAGTCCAGAGCACGCAGCTGGGGCCAGCAGCAGCGCCAGCAGTCAGTATGGAGCCGAAAACCTCAGGTCCTGCAGTCCACATAGTTCCTCAGACCAAACCGAAGCCACAAGCCTGGCCTCGTACGAACATATCAACCGTGTCCTGAGAGAGGCTCACTTCCAGAGCCTACACAACAGAGGTCAGTCACGGGATAGGTGACTTTCAGAGAGTGTCACATCTCTGAGAGTGATCCCTTCACTCTACCTGAGCGCCTGGCTACGTTCCCCAGGAGACAGCGTAGAGATCATCAACAAGTTTATTCTGACTTTTACATGCTAGAGCTCTCAtttgtgattagtgtgatttttttgaATTGAAAGTGTGGCCTGAAACTGTAAAACTATTGACTAATTAGAGCACAAAAGGATTCACATTGTAAGCAATAATAGCTTGGTGGCAATGCAACCTTTTGTGACATAcacactgtgtatttttcttctgAACACACCAGTTTACATGTAAATGAGAGCTTCATTGCGGGTGGAACTGCTCCTGGTGCATATTATCGTTTCATTGCTGGTTCACTTGTGCACTTGGGGGGGTATGGGGTAATCACATTTACAACAATCTAGaaatcttttgtttatttattgaactCGATTGTTAAGTTGGCACTTGATGTATGTTGATGTGAGGTATAAACCCATGTTTGTAAGAACAAGCCCCTGGGTTTGTAACTCTTAGTGATGGAACAGCCATACACCCTTCCTCTTATATCAGCTCACTGATATGTGATTACGTTTCCATCCCCCCATCTCTTACTAGCTCTTTATCCAATGGTCATGTGGATCCAATTAAATTGCAAGATTacttgttgtttatttttactatatatttttatggaaACATTGGATGATATTTTACATTCATGTCacctacattttaaaaataaagatggcTGTTCCTAAGTACGAGTgcaactttattaaaaatgaaaatggcaacCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250308 lncRNA downstream 27879 14847252 ~ 14847456 (-) True G211274
TU250303 lncRNA downstream 31023 14827235 ~ 14844312 (-) True G211269
TU250196 lncRNA downstream 253553 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA downstream 253553 14619774 ~ 14621782 (-) True G211195
TU250187 lncRNA downstream 280671 14588820 ~ 14594664 (-) True G211187
TU250394 lncRNA upstream 56546 14934669 ~ 14935121 (-) True G211346
TU250411 lncRNA upstream 100496 14978619 ~ 14983132 (-) True rac1b
TU250397 lncRNA upstream 122822 15000945 ~ 15001328 (-) True G211349
TU250420 lncRNA upstream 157046 15035169 ~ 15036895 (-) True G211363
TU250752 lncRNA upstream 466386 15344509 ~ 15344731 (-) True G211688
XM_034309677.1 mRNA downstream 34966 14768607 ~ 14840369 (-) False LOC113528036
XM_034309678.1 mRNA downstream 34966 14768607 ~ 14840369 (-) False LOC113528036
XM_034309676.1 mRNA downstream 34966 14768607 ~ 14840369 (-) True LOC113528036
XM_034309679.1 mRNA downstream 34966 14771752 ~ 14840369 (-) False LOC113528036
XM_026916276.2 mRNA downstream 67107 14768607 ~ 14808228 (-) False LOC113528036
XM_026916006.2 mRNA upstream 22710 14900833 ~ 14909395 (-) False otop2
XM_026916007.2 mRNA upstream 22710 14900833 ~ 14909377 (-) False otop2
XM_026916005.2 mRNA upstream 22710 14900833 ~ 14906783 (-) True otop2
XM_026917126.2 mRNA upstream 53793 14931916 ~ 14934161 (-) True amn
XM_026917169.2 mRNA upstream 63780 14941903 ~ 14947534 (-) True LOC113528557
XR_004579411.1 other downstream 185203 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 354360 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 384560 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 845694 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 868823 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 593654 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2414728 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2414728 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2414728 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2414728 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile