RNA id: XM_026916169.2


Basic Information

Item Value
RNA id XM_026916169.2
length 2376
RNA type mRNA
GC content 0.39
exon number 7
gene id rab28
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20342473 ~ 20374576 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTGTTTGAGTGAACATGGCGGCCCGTTGCTTAGTACAAATTGTTACGTGATTATAACCTTAAATTGCCAAGCATCTTACTGATTTCATTGTTTTGTCGTATTTACTCGTGtgcttactgtatatatacactcatacacaccgaTAAATATGTCGGATTCGGAGGAAGAGAGCCAGGAGCGGCAGCTGAAGATGGTGTTAATCGGAGACGGAGCTTCGGGAAAGacgtCACTCGCCACTCGTTTTGCGCAGGAAGCTTTTGGGAAGCAGTACAAACAGACGATAGGGCTTGATTTCTTCCTCAAGAGAATCACACTGccagGGAACCTGAATGTGACTCTGCAGGTGTGGGACATTGGAGGACAAACGATTGGAGGAAACATGctggataaatatatatatggcgctcatggtgtCTTACTGGTGTATGACATCACGAACTCTCAGAGTTTTGAGAATCTGGAAGACTGGTATGGTGCAGTGAAAAAAGCAAATGAGGAGTCAGACACACAACCTGTTATTGCACTGGTGGGCAACaagattgatCTGGAGCACATGAGGACAGTAAAACTGGATAAACACCAGCGTTTCTGCCAGGAGAACGGCATCATCAGCCAGTTCGTATCAGCCAAGACTGGAGACTCgGTTTTCCTCTGTTTTCAGAGAGTGGCAGCTGAGATTCTGggaataaaactgaataaagcAGAAATAGAACAGTcccagaGGGTGGTGAAGGCCGACATTGTAAACTACAGTCAGGAATCGGTGGCTCGGACAGTCAACGCTCCACGCAGCTCCATGTGTGTTATACAGTGATCTACAcaacaccatctctctctctctctctctctctctctctgtttacgAGACTGCAACCAGCAAAGAGcaacacacgcatacacacatttatcgCTTTGTTCTCtcgtatagtgtgtgtatgtgtgtgtagatctaCAGCAGTAGATTTCAGCATTCTGCATTTGTAAATGCCAGTTTCTTAATATGTATgtgctataataataaatgtgtttaggAAAAATAAAggggtgtgtgcgtgcgtgtgcgtgtgtgagtgcgcGTGTGAAACTGAACCATGCTACCCGTTTACGCATTCTTTATTTTGCCAATTTAAGCTGGACGTATGAGTAGATCCTCACACTTTCATGAAAAAAGGAGTGTGGGAGGTGACATAactggctgtgtcccaaatgctagTGTTTGATTCTTATTAGAATCCACTCGAACATATTTGGGTTTGACACTTTACATAAGTATTGCAGCCTGCCAGCTATTCGCATATTTAGTGGTTAGAGCGTGATATATGACCTCCATTTGTGTTACAGGGAACAAGTTAATACTTTCACATAGTGAAAGAAATGCTGGTAATGATGAGGTGAGAACTCTGAGATTGTCCTGACAGAATGGATACGTCGACAGCTATGAAAGCAAGCAGCTTGCTAAACCAGCTGGTTTAGTCAGAAAACTAAATAGTACAAGCTGAAAATCTAAACTGCAGTACACTTTTGATGACGAGGTCAACATTCTGAATTTCCAACTACAAGTTAGACAAAtacatgattatttttaaaagcggTCAACTTTAAAAAGTAATTCCAACACCACATGAATGAACTGTAACTATTTAATTAAACAGTCATACAAATCTTACATTTGTGAACCAACTTGAAGCCATTTCTTGAATTTAATACCATCATACTccagcagtgcattatgggtaaagtACATGGTCCAGCAGCCACCAAGGCTAACCCTAGCCATATGAACAATCTAACAAAGTAACTACTATCAAGCTTTATTAGAATGGGTTtttaaaagagatttaaaatgGCTGATAGAGTTCTCAGATGCTCAAACTAATCAGCAGTTATGGGTGgttgatattaaaatatttaaaatgataaatacgAGATTGCTATCTGTATACTCAGTGCTGGATTTCTGAGAGCTTCAGCTGTGAAAAGTGCGTGTTTCTAGTGCTTTAAAAGCTTCTTGGTGAAGCAAATAACAATGAGACCGAGGTGTTCATCACAAGCCGACTTATTTTATTAAGCGTGACTTCATTTCAACTccaaattttaagaaaaatgtctataaaggagggatttttatttttccaactaCAATAATGTGCATATCTATTACAGTGATGATTTTGTTACAAAACTATAAAATGTTCCATCAATTTTGGAATTTTACTTTTATAGACTTTAATATAGATAGAACCATAATATCATAAGGCATCCTTTAAGGATGCATTTTTTTAGTGTTATGTCCATCAATCTCTGATTTGTCATGTATAAACTGTGGTTATAAAATGAGGACTTAAGTTTACAcactgtggttaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07915 RAB28; Ras-related protein Rab-28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253634 lncRNA downstream 135328 20205794 ~ 20207145 (-) False hs3st1
TU253590 lncRNA downstream 286329 20020552 ~ 20056144 (-) True G214159
TU253468 lncRNA downstream 358324 19940354 ~ 19984149 (-) False lyar
TU253270 lncRNA downstream 678711 19663337 ~ 19663762 (-) True G213879
TU253100 lncRNA downstream 920058 19417184 ~ 19422415 (-) True G213716
TU253789 lncRNA upstream 61476 20436052 ~ 20438834 (-) True G214325
TU253795 lncRNA upstream 70947 20445523 ~ 20445748 (-) True G214331
TU253976 lncRNA upstream 404189 20778765 ~ 20781702 (-) True G214493
TU254012 lncRNA upstream 466855 20841431 ~ 20841634 (-) True G214526
TU254118 lncRNA upstream 525509 20900085 ~ 20904041 (-) False spry1
XM_026917223.2 mRNA downstream 128844 20205339 ~ 20213629 (-) True hs3st1
XM_026916092.2 mRNA downstream 146960 20177265 ~ 20195513 (-) False LOC113527919
XM_026916091.2 mRNA downstream 146960 20177265 ~ 20195513 (-) False LOC113527919
XM_026916090.2 mRNA downstream 146960 20177265 ~ 20195513 (-) True LOC113527919
XM_026916840.2 mRNA downstream 184086 20142877 ~ 20158387 (-) True wdr1
XM_026916964.2 mRNA upstream 9181 20383757 ~ 20386625 (-) True nkx3-2
XM_034310025.1 mRNA upstream 20108 20394684 ~ 20400475 (-) True LOC117598840
XM_034309810.1 mRNA upstream 25904 20400480 ~ 20412128 (-) True bod1l1
XM_026916159.2 mRNA upstream 39524 20414100 ~ 20418381 (-) True aurkb
XM_034309805.1 mRNA upstream 45182 20419758 ~ 20424672 (-) False tmem107
TU253598 other downstream 278983 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 894139 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 1266133 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 1965110 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 2488834 17828167 ~ 17853639 (-) True tsen54
trnal-aag_9 other upstream 38273 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 639863 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 1297586 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 1298246 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 1301062 21675638 ~ 21676807 (-) True LOC117598868

Expression Profile