RNA id: XM_034309671.1


Basic Information

Item Value
RNA id XM_034309671.1
length 2377
RNA type mRNA
GC content 0.48
exon number 15
gene id dus1l
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3630439 ~ 3639871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGCAACGTACAGAAACTCTCGCGATATTTGACCTCACAACGATTTTTATGGAATATTACAGTGGAAAACAAGAAATTTTGCCACtttgtttttcagttcgCAGTGGGTCCTACCGGAACGCTTTGCGATAACTAGTGTTGTCGCACGGACCCACTTTCCCGCAACGCACCGCCGAGAGCACAGTGCTGTGCCTGAGCTGAGGCGATGGAGAAGCTGCAGGGTTTTGAGTTCTGGAGGAAGACTCTTTGTGCTGCACGCTTCGTCCTCGCGCCCATGGTGGACCAGAGCGAGCTCGCGTGGAGGCTGCTGAGCCGCAGACACGGAGCGGAACTGTGCTACACACCGATGCTGCACGCGCAGGTGTTTGTACGCGACGCCAACTACCGGCGAGAAAATCTGTACAACGAAGTGAACCCTGAGGACCGCCCTCTCATCACACAGttctgtgcaaatgACCCAGAGGTGTTTGTCCAGGCAGCACTTTTAGCTCAGAACTACTGCGACGCCATCGACCTCAATTTAGGATGCCCTCAGATGATCGCTAAACGCGGTCACTACGGTGTGTTTCTGCAGGACGAGTGGGACTTACTGGAGAGAATGAttaaattagCCAACGAGAAGCTCTCCGTGCCCGTCACGTGCAAAATCCGGGTTTTTCCAGAGGttgaaaaaacagtgaaatatgcCAAGATGCTGGAAAAAGCGGGTTGCCAGTTGCTCACCGTTCATGGCAGAACCAAAGACCAGAAAGGAGCGCTGACCGGAGTGGCGAGCTGGGAGCACATTAAAGCCGTACGAGAAGCTGTGAACATCCCGGTTTTTGCTAACGGAAACATTCAGCACCTGAGTGACGTGCAGCGCTGCATGGCGGAGACGGGAGTGCAGGGCATCATGAGTGCAGAGGGGAACCTGCACAACCCGGCGCTGTTCGAGGGCCGTAACCCGCCTGTGTGGGAGGTGGTGGAGGAATATCTGGAGGTGGTGAAGAAACACACGCCCAGCACGCTATCACATGTCCGAGCTCATCTCTTTAAACTCTGGCATCACACGCTGCAGATCCATCAGGACCTGAGAGAAGATTTGGCCAAAGCAAAGAACCTGGCAGGAATTGAGGAGGTGAACAGACAGCTGAAGCAGCGCTGCCAGGAGGAGATGGGTAAGGATGAATCGGAGCGACATCAGACCGGACTGCCTTTTCCTCATTGGATCTGTCAGCCGTACGTCAGACCAGCGCCGAAGGATCCGAGCAGCGAGAACGGCGTGAAGGCGGTGAGCGGGAAAAGGGCGTTGGAGGACAGCGACAGCTCCAACGACTCGCTCTCCAAGAACAAGCAGAAGAAGAAAGTCAGGAACCCGCAGAAGAACTTCTGCCCCGAGCTCAAACCAAAGTACATCAAATGTGAGCAATGTGGGAATCCCAAAGGGAATAAGTGTGTCTTTAACCTGTGTCGTGGCTGCTGTAAGAAAAAGGCTTATAAGGAAGTCGCAGATTGTCCAGGTCACGGCTTGAGGTTCAAGACGAAAGCGCAGAAGCAGAAGGTCGCTGTCCAAACAGAGATATCGTCCTAAACCTCTGCGTCGCTCGAGTTCCGGCTCGGACTTTGCTAAGAGTTCGGTTTTAGCATCCGCACTGCAAACGCAACTCATGCTGTAAACGCAACAAAACGAGTGTATCTtactcacatacacatatgcatTGAAACCGAATACTGCTGCTGAAGAGTAAAAACTTATTACTACTTTAGAGGGGAACGAATTCcatacaggaaaacaatcacaCACGATTAAAATCTGTAACTTGCAGAGACTAAATTTTGTACGTAGGGTTTTCATGTAGCTGCAACTTGTAGCTACAACATTGTTTTagctaagccccgcccccaaagaCTTGCCAATATACTGTAAACCTCGGCGTTGTGGCTGTTTTACACTTCAATCCTCAGATATTAAACGGAACAGCTAGAATACAGGGCTAACTTATTTAAACTACGCAAACACCTTTTCTGTTTTAAcgggttttttaaaaattattaatttatttacatttaggttttttttttaaacataacagATACCcaatattttcacatgttcaatCAACACCAAAGTCAAATTTCAGTTTCTGCTGATGTTCTACATTTGCGACACTCACGCGGGAGAATGTTGACGCTCTTGGGAAATCAGGATATCATGTCAGAGCTGGATTTACCAGCACGTTATCTGAACACAGCTTGAAAATTGAAATCTAGTGTAGTATCCTCGAGGTACATGAAACTGCTGTTTTTCTGAGGATCATCTGTGACATTTccactgctttgtgtttttaacaTTGAGGTTTTTACAAtgaataaaacttttaaagTTCTTTTAAGCAA

Function

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05542 DUS1; tRNA-dihydrouridine synthase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242528 lncRNA upstream 40408 3587902 ~ 3590031 (+) True G204771
TU242522 lncRNA upstream 42891 3534289 ~ 3587548 (+) False glyr1
TU242534 lncRNA upstream 56919 3570763 ~ 3573520 (+) False glyr1
TU242422 lncRNA upstream 227092 3399769 ~ 3403347 (+) True G204679
TU242421 lncRNA upstream 273533 3353298 ~ 3356906 (+) True G204678
TU242550 lncRNA downstream 5892 3645763 ~ 3646675 (+) True G204790
TU242531 lncRNA downstream 8318 3648189 ~ 3649538 (+) True G204774
TU242530 lncRNA downstream 33113 3672984 ~ 3715580 (+) True G204773
TU242579 lncRNA downstream 136733 3776604 ~ 3786578 (+) True G204815
TU242596 lncRNA downstream 213625 3853496 ~ 3882959 (+) True G204832
XM_034309979.1 mRNA upstream 42743 3563650 ~ 3587696 (+) True glyr1
XM_034309980.1 mRNA upstream 42743 3563650 ~ 3587696 (+) False glyr1
XM_034309981.1 mRNA upstream 42743 3563650 ~ 3587696 (+) False glyr1
XM_034309982.1 mRNA upstream 42743 3563650 ~ 3587696 (+) False glyr1
XM_026916263.2 mRNA upstream 69761 3541110 ~ 3560678 (+) True ppl
XM_026916239.2 mRNA downstream 45607 3685478 ~ 3692367 (+) True zgc:86896
XM_026916237.2 mRNA downstream 54858 3694729 ~ 3714082 (+) True wipi1
XM_034309825.1 mRNA downstream 54858 3694729 ~ 3714082 (+) False wipi1
XM_026916693.2 mRNA downstream 83892 3723763 ~ 3733885 (+) True slc16a6b
XM_026916694.2 mRNA downstream 83892 3723763 ~ 3733885 (+) False slc16a6b
TU242330 other upstream 430306 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 617580 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1474590 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1744961 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2039364 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 326887 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 326887 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 326887 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 326887 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 331308 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile