RNA id: XM_026916173.2


Basic Information

Item Value
RNA id XM_026916173.2
length 1348
RNA type mRNA
GC content 0.47
exon number 10
gene id sgf29
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9049773 ~ 9056443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTTTTCAAAACATGCCCTGCACAGCTTGTCCCTCCCAGGCTCCCGTACAAGGCCTAACCAACCCGATTCAAAACCGAAAATAAAGCTTCTAAACCGAGGCTCAATGGCTTTAGTGTCTGCAGATACCAAAATTGCTGAGCTGCTGAATGAGCTCCATCAACTAATCAAACAAACTCAGGAGGAGCGCTCACGCAGTGAACACAACCTACTGAACATCCAGAAGACACATGAAAGGATGCAGACAGAAAACAAAACTTCTCCATACTATCGGACAAAGCTGCGTGGACTGTACACCACAGCAAAAGCAGATGCAGAGGCTGAATGCAGTATATTGCGCCATGCTCTTGACAAGATTGCAGAAATTAAATCACTACTGGAGGAGAGACGTATTGCTGCACGGATGGCAGGGGTGTACAATGACAGCGACCCACCCAGGAAGACCATGCGCAGAGGTGTTCTGATGACCCTGTTACAGCAATCTGCAATGACGCTTCCTCTATGGATTGGCAAACCAGGTGAAAGTCCACCCCCTCTGTGTGGAGCGATGCCTGCGAGCAGTGACTACGTGGCTAAGCAGGGTGATAAGGTGGCAGCTCGGGTGAAGGCTGTGGATGGTGATGAACAGTGGATTCTGGCTGAAGTGGTCAGCTACAACCACTCCACCAACAAGTATGAAGTGGATGACATTGACGAGGAAGGAAAGGAGAGACACACTCTAAGTCGAAGAAGAATCATCCCACTGCCACAATGGAAAGCCAACCCAGAGACAGACCCTGAGGCACTGTTCAGCAAAGATCAGCTGGTGCTGGCTCTCTACCCACAAACCACCTGCTTCTACAGAGCCCTGATTCATAACCCCCCACACCGGCCCCAGGATGACTACTCGGTGCTGTTTGAAGACACGTCCTATGCAGACGGCTACTCACCGCCTCTCAACGTAGCCCAAAGATACGTAGTGGCCTGCAAGGAGAACAAGAAAAAGTGAGGAAGAGGATTGAGTGGATGGAGATCTGGACCTGATTAAGTGGTCTTTAAGTAGGAGGACTGATGTAGAATCAGACTTCTGCTGCATATAGTCACTACGTCACCAAATGCATCTGAGACCAGGACTCAATCTGAAATGACTGAATACCAGCTCCGATGAAAACGTACCTGGGATGGCCtaaatatgtgtttatatttgtacatGACTCTTGGATTATCATTGGTATGAATGGTGAAATAGCATAATTTGTGGTATGTGTAGATCATATGTTTTTTGTACAACATTCCTGTCAGTGTGGGGCCAAAGAAAAGGACTGcagatatacattttaacaaaataaaagagaaaaaaattttcTAGA

Function

GO: NA

KEGG:

id description
K11364 SGF29; SAGA-associated factor 29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246531 lncRNA downstream 18795 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 24790 9024761 ~ 9024983 (-) True G208151
TU246517 lncRNA downstream 42514 9007000 ~ 9007259 (-) True G208145
TU246439 lncRNA downstream 91562 8957261 ~ 8958211 (-) True G208099
TU246438 lncRNA downstream 93376 8955866 ~ 8956397 (-) True G208098
TU246536 lncRNA upstream 5137 9061580 ~ 9063507 (-) True G208158
TU246570 lncRNA upstream 46468 9102911 ~ 9103126 (-) True G208189
TU246658 lncRNA upstream 65753 9122196 ~ 9123881 (-) False LOC113527952
XR_004579419.1 lncRNA upstream 385543 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 385543 9441986 ~ 9446050 (-) True LOC117598997
XM_026917054.2 mRNA downstream 682 9045645 ~ 9049091 (-) False nfatc2ip
XM_034309673.1 mRNA downstream 851 9045645 ~ 9048922 (-) True nfatc2ip
XM_026916525.2 mRNA downstream 5637 9032844 ~ 9044136 (-) False spns1
XM_026916523.2 mRNA downstream 5637 9032844 ~ 9044136 (-) True spns1
XM_026916526.2 mRNA downstream 17741 9022546 ~ 9032032 (-) True lat
XM_026916158.2 mRNA upstream 47858 9104301 ~ 9120154 (-) True si:dkey-93n13.2
XM_034309669.1 mRNA upstream 47858 9104301 ~ 9109643 (-) False si:dkey-93n13.2
XM_034309667.1 mRNA upstream 56523 9112966 ~ 9142871 (-) False LOC113527952
XM_034309665.1 mRNA upstream 56523 9112966 ~ 9142871 (-) False LOC113527952
XM_026916153.2 mRNA upstream 65296 9121739 ~ 9142871 (-) True LOC113527952
TU246334 other downstream 336455 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 765181 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 782135 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1618701 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 131077 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 140053 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 140053 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 353361 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 353361 9409804 ~ 9419584 (-) False prr15la

Expression Profile