Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916178.2 |
| length | 1242 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 7 |
| gene id | ube2ka |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21157480 ~ 21163061 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| id | description |
|---|---|
| K04649 | HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU254118 | lncRNA | downstream | 253439 | 20900085 ~ 20904041 (-) | False | spry1 |
| TU254119 | lncRNA | downstream | 253643 | 20903098 ~ 20903837 (-) | True | G214626 |
| TU254012 | lncRNA | downstream | 315846 | 20841431 ~ 20841634 (-) | True | G214526 |
| TU253976 | lncRNA | downstream | 375778 | 20778765 ~ 20781702 (-) | True | G214493 |
| TU253795 | lncRNA | downstream | 711732 | 20445523 ~ 20445748 (-) | True | G214331 |
| TU254389 | lncRNA | upstream | 73933 | 21236808 ~ 21257851 (-) | False | slc16a2 |
| TU254391 | lncRNA | upstream | 73983 | 21236858 ~ 21244785 (-) | False | slc16a2 |
| TU254446 | lncRNA | upstream | 164785 | 21327660 ~ 21329675 (-) | True | G214917 |
| TU254466 | lncRNA | upstream | 191131 | 21354006 ~ 21356874 (-) | False | LOC113528016 |
| TU254470 | lncRNA | upstream | 196822 | 21359697 ~ 21359899 (-) | True | G214933 |
| XM_026916250.2 | mRNA | downstream | 1680 | 21147066 ~ 21155800 (-) | False | LOC113528020 |
| XM_034309860.1 | mRNA | downstream | 1680 | 21147066 ~ 21155800 (-) | False | LOC113528020 |
| XM_034309856.1 | mRNA | downstream | 1680 | 21147066 ~ 21155800 (-) | False | LOC113528020 |
| XM_034309857.1 | mRNA | downstream | 1680 | 21147066 ~ 21155800 (-) | True | LOC113528020 |
| XM_034309859.1 | mRNA | downstream | 1681 | 21147066 ~ 21155799 (-) | False | LOC113528020 |
| XM_026917194.2 | mRNA | upstream | 2976 | 21165851 ~ 21174532 (-) | True | klb |
| XM_026916809.2 | mRNA | upstream | 22087 | 21184962 ~ 21201869 (-) | True | ints10 |
| XM_026916810.2 | mRNA | upstream | 22087 | 21184962 ~ 21201742 (-) | False | ints10 |
| XM_034310189.1 | mRNA | upstream | 22087 | 21184962 ~ 21201742 (-) | False | ints10 |
| XM_026917302.2 | mRNA | upstream | 73927 | 21236802 ~ 21272507 (-) | True | slc16a2 |
| TU254170 | other | downstream | 130221 | 21014439 ~ 21027259 (-) | True | fgf2 |
| trnal-aag_9 | other | downstream | 744550 | 20412849 ~ 20412930 (-) | True | trnal-aag_9 |
| TU253598 | other | downstream | 1093990 | 20040423 ~ 20063490 (-) | False | slc2a9l2 |
| TU253095 | other | downstream | 1709146 | 19444989 ~ 19448334 (-) | False | rbbp6 |
| trnat-cgu_6 | other | downstream | 2081140 | 19076269 ~ 19076340 (-) | True | trnat-cgu_6 |
| LOC113546932 | other | upstream | 509287 | 21672162 ~ 21683433 (-) | True | LOC113546932 |
| LOC117598919 | other | upstream | 509947 | 21672822 ~ 21673330 (-) | True | LOC117598919 |
| LOC117598868 | other | upstream | 512763 | 21675638 ~ 21676807 (-) | True | LOC117598868 |
| TU254923 | other | upstream | 513396 | 21676271 ~ 22215359 (-) | False | G215187 |
| LOC117598954 | other | upstream | 521149 | 21684024 ~ 21684645 (-) | True | LOC117598954 |
