RNA id: XM_026916182.2


Basic Information

Item Value
RNA id XM_026916182.2
length 1706
RNA type mRNA
GC content 0.53
exon number 7
gene id asb16
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8212029 ~ 8218351 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGACCACAGAAGTCAGGTGCAGCTGTGACATAGAGGAATTAATAGGAAATTGCTATTTACTGCGCCCTCCACCGGCAGTTTGCTGATAGTGCAGTGGTAATATATCGGCTGACATTTTCTTCTATTAATACCGCCAGCTTTAACTGGGGTCAACAATATCTTGTGACTAGCTGTGCAGTCTCTCAGAAAGGACATTAGCTTGTTTAATCGTTTTATCCGGTTTCTTATGTATAGAAAGATCAGAGGCACATAGTAAgcaaaaactgaactgaatagtggatcattttaaacagataatcattttaaaatgtaggcAGCTTTCTTTGGACAAAAGCTGATAGAAGACCTTTTTTTCAGGCTTTGAGGAGCTGCAGGACTGGGAGGAAACACGAAGGGCACTAGCACACAGGAGGGTAATGAGTAGGCGGCCAATGCCAGCCGCACCCCGGCTCAGACACGGGACAGAGAGGATCCAGACAGTACGAGCCCCTCCACCTCAGATCCACTGCAGAGACCCGGCTGTCCACAACACCTTCATGTATGGAGACATGAGGAGTGTGTACGCTGTACTCAAGGAACCTGGTATGGTGAATGCCCTAATGGAGATCGTCCATGAGGAGATGGTGTGGACTCCAGAAATGGGCATGTGGACTCTGTCCTCCAAAGTGAAGCAGACATCTGCCCTGCGCTTGGCTGCCAGCAGGGGTCACTATGGTTGTGTGGAGGAGCTGTTATTCCGGGGAGCGGAGGTAGACGCTGACCCTGGGGGTCGAACAGCCCTCCATGACGCTTGTTCCGGGGGTCACCACGCCTGTGTAAAGCTGCTGCTGGAGCATGGAGCTGACCCTGATCTGGTGACAGCAGACGGCAATGCGCCCCTTCACCTGTGCAGCACTGCTGAGTCCTATGCCTGTACAGAGCTGCTAGTCAGCATGGGTGCCGATGTGAATGTGGCCCAGCACGACTCGTGTCTCACTCCACTGCACTTGGCATGTCGGAAGGGCCTGGAAAAACATGTGGACCTGCTGCTGGCCCACGGAGCCGATGTGACTGTGCAGAACCGTGAGGGCGAGACGCCGCTGAATGCTGCGTGCGCGGGAGCTGAGAGGCCAACTGAGGCTGCACGATACCTGTGTGTGGTGCAGAGACTGCTACAAGCTggagcacatgcacacacagctggCAGGAAGCAGCACACCGCTCTACACAACGCCTGCAGCAACTGCAGCTATCAAATTGCTGATATGCTTCTGCAGTATGGAGCTCAGGCAGATGCAGCCAACTGCACAGGATACACACCCATGGACTGCCTGCTGCAGgTGGTAGAGGATTATCCAGACCAGCACCCTGAACTAATCGCTCGTTCACTTCTAAACCACGGAGCAAAGCCTCCTTCTACCAGAATGCTGAAGTTCTGCCTCCTTTCCCCTGCCACTCTGGAAGTGATGCTGAACTGCTACCCAGTGGTGCCAGACTGCAAGGACTGGATACAGGAAGTCCCAAATGAACTGCTGAAGGAGCACAAGTGTTTCTTTGACTCGGTTCGCCGGATGTGTGGGCAGCCCCGCACCCTCCAGCACCTCTGTCGATATTCCCTGAGACTAGGTATGGGTGCACGATGCCACTCTGCCATCGATAAGCTAAACATCCCGTGTGCACTGAAAGAGTACCTGCTGCTGCCGATTAAAGGAGAGATCCAGTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402951.2 lncRNA upstream 2162 8209298 ~ 8209867 (+) True LOC113528504
TU245858 lncRNA upstream 10437 8201292 ~ 8201592 (+) True G207616
TU245851 lncRNA upstream 53848 8157944 ~ 8158181 (+) True G207610
TU245829 lncRNA upstream 68792 8120452 ~ 8143237 (+) True LOC117599010
XR_004579452.1 lncRNA upstream 69384 8120453 ~ 8142645 (+) False LOC117599010
TU245854 lncRNA downstream 19377 8236733 ~ 8250981 (+) True G207612
TU245973 lncRNA downstream 70101 8287457 ~ 8289905 (+) True G207717
TU246111 lncRNA downstream 268280 8485636 ~ 8485935 (+) True G207845
XR_004579432.1 lncRNA downstream 282398 8499754 ~ 8534003 (+) True LOC113528543
XR_004579433.1 lncRNA downstream 282398 8499754 ~ 8534003 (+) False LOC113528543
XM_026916195.2 mRNA upstream 11246 8163843 ~ 8200783 (+) True vat1
XM_034309970.1 mRNA upstream 97444 8070714 ~ 8114585 (+) True mrc2
XM_034310023.1 mRNA upstream 149434 8047426 ~ 8062595 (+) True tlk2
XM_034310024.1 mRNA upstream 149434 8047426 ~ 8062595 (+) False tlk2
XM_034310185.1 mRNA upstream 169226 8031681 ~ 8042803 (+) True mettl2a
XM_026916463.2 mRNA downstream 2169 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA downstream 2171 8219527 ~ 8226005 (+) False tmub2
XM_026917167.2 mRNA downstream 93660 8311016 ~ 8358151 (+) True ngfra
XM_026917121.2 mRNA downstream 236647 8454003 ~ 8484944 (+) True LOC113528522
XM_034310186.1 mRNA downstream 625841 8843197 ~ 8873465 (+) True LOC113528198
trnas-cga_1 other upstream 203762 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 358520 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 912345 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 939498 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1096094 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 679262 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 844209 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1726950 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 2132046 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 2155059 10372415 ~ 10417881 (+) False G208781

Expression Profile