RNA id: XM_034309690.1


Basic Information

Item Value
RNA id XM_034309690.1
length 2099
RNA type mRNA
GC content 0.47
exon number 16
gene id eps8l1a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7007148 ~ 7019641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtatgtgcatgcatgtaGTCAGATAGAGTTGCTTCCTGGAATGCGTAAACAGAAGATGTGAGACTGTCGCATGTCTACTCATACGATGAATCCCCCAAAGGTTGTTCCCAGGAAACATTCTTTACTCAGACCTTTTCCTGCAGAAGGCCAGCCCACTCATACACGAGtgaatggGAAGGAAAGAGTTAGACAACCAAAACATGACGTGgagCTGTTAAACCACTGCATTTCTGATGTGGAGCGCTTCATGGCCCACCTGCAGCAGGCAGCTGATGCTCAGCGCACTCTGCAgcaaaacatgaaaagaaaaaagaacagcaaaaaGAAGAAGCAGGGCTatGATGTCATGATGACAGAAGTAATCCCTCCAACCGAACAAGAGTTTGTGGACATTTTCCAGAAGATTAAATACTCATTCAGTTTGCTGGATTGTTTGAAGACAGACATAGCAGATCCAAACTCAGAGGAGCTTCTGCATCACCTGTTTGTTCCTCTCAACCTGaTGGTCAAAACTACAGGTGGTCCTGAGTTGGCGGCCAGTGTGTCCAGTCCTGCACTGACCAGTGGAGCCATTTCTCTTCTGCAGAAGAATCTCACGCGGGAGGAAAGAGAGTTGTGGAGCTCTCTCGGCCCCAACTGGACCCAGGCAAAttcacAGCATGCTAAATCGGCATCTCCGTATACTCCAGTTTTTCTGGACGGCTGGAAGCCTGATGCCTTTGATGTAAACGGTCAGGCTTTTGAAGATCCTGTTGAATCACAGAACAAAAAAGAGGCCCTGCTGGAACATCAACAGTCAGAATTTAGCCAGCCCTCATCACCTGTCCAGCTCACAGATGAAAGCATGGAAATTCCACTTCCTGACCCGTACCGCTGCAGTTATGACTTTGTGGCCCGAAACAGCAGTGAGCTTTCAGTGCTGCATGGAGAAACTCTCCAGGTGTTGGACTCGTCTAAGCGGTGGTGGAAGTGTAGGAACAGTTATGACCAGATTGGCTTTGTTCCGTCTAATATCCTGGAGCCCGTCAACCAGACAGAGCAAGACTACAGCGTGGTAATGCGCAAGCCGTCTACGAAAGTTCCTTTATCTCCTGCGGGAGTTGGACGCTTTTCGTATATAGCACCCAATCCATCAGGGGGAGACCACGCCCACACCGAGCTCCGCCCCGTCAGCATGCCACCAATGGGTAGTGACGGAGAGAGagTAATGCTCATGAATAATGAGCTTGCACAGCGGCTGGCTAATGGGAGATCGGGATCAATGCGGCCTCTGGTTATCAACAAGGCCAACGACACTACAGTACCTCTCAACTACCACTCACCTTCGGCTGAGGTACGGGAGTGGCTCAGAGGCAAAGGATTCAGTGATAAcacagCCAACAGTTTGGGGGTTCTCACTGGAGCTCAGCTCTTCTCTCTGAGTAAAGAGGAGCTGTGCAAGGTTTCTCCTCAAGAGGGGGCCAGAGTTTACAGCCAGATCATGGTGCAGAAAGCTCAGCTGGAGACTGAAAGAAAAGCCACTGAGCTGGAGGCAGTGATGAGAAAACAGAAGATGAAAGTGGATCCCAGCATAGAGGGGGGAGAATTTtaattcaccacacacacacacacacgcgcacacacacaggcctggtttatacttctgcatcAGCATGCatttgtgtatctgtgtcaCAACAGAGAAAGGGGGTTTATGGGTAACCGTTGCATGCAGAGAAGCTTTTATGGTATGTCTGGTTGTGTACCTGGAAACCCttcttacatgttttttttttgtgagtaaAATGTTGTTCCAAATATATCTtgtgtaaacaataaaactttaaaaaataaagtgtaaataataaaattttcgTGATCACATCCAGTACTTGTCATCTATATAGAAATGTGCTCCTGCTCCCCAACTGCTTTTCAATAGTGCAGTCTGTTAAAAAATCTTATACAGCTCACgacagaagtataaatcagcacacacacacacacacacacacacacacacacacacacacacacgttcatattaataaaagtaTACCTTCATTGCCAGTAATACTCAGATCAACTGTCTTTCAATAAATAAGACGGATCACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245054 lncRNA upstream 5006 6930320 ~ 7002168 (+) True G206955
TU245037 lncRNA upstream 75788 6898842 ~ 6931386 (+) False G206942
TU245030 lncRNA upstream 107242 6898842 ~ 6899932 (+) True G206942
TU245032 lncRNA upstream 107242 6898842 ~ 6899932 (+) False G206942
TU244902 lncRNA upstream 213776 6790822 ~ 6793398 (+) True G206835
TU245151 lncRNA downstream 34745 7054386 ~ 7058819 (+) True G207025
TU245223 lncRNA downstream 274844 7294485 ~ 7296973 (+) True G207084
TU245258 lncRNA downstream 298386 7318027 ~ 7318360 (+) True G207111
TU245255 lncRNA downstream 299497 7319138 ~ 7321930 (+) False spsb3a
TU245299 lncRNA downstream 366375 7386016 ~ 7388543 (+) True G207140
XM_034310303.1 mRNA upstream 70634 6921699 ~ 6936540 (+) True pold1
XM_034310302.1 mRNA upstream 70785 6919007 ~ 6936389 (+) False pold1
XM_034310304.1 mRNA upstream 70785 6919450 ~ 6936389 (+) False pold1
XM_026917007.2 mRNA upstream 108702 6893231 ~ 6898472 (+) True aspdh
XM_034309683.1 mRNA upstream 660790 6343359 ~ 6346384 (+) False nkiras2
XM_034310184.1 mRNA downstream 830 7020471 ~ 7045978 (+) True LOC117598990
XM_034310239.1 mRNA downstream 8134 7027775 ~ 7033434 (+) True LOC117599002
XM_034310238.1 mRNA downstream 8134 7027775 ~ 7032853 (+) False LOC117599002
XM_026916950.2 mRNA downstream 64800 7084441 ~ 7102215 (+) True eftud2
XM_026917244.2 mRNA downstream 88558 7108199 ~ 7131967 (+) True LOC113528597
TU244415 other upstream 746317 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 812210 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 831808 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 872603 6130783 ~ 6134571 (+) True si:ch211-198p11.6
XR_003402939.2 other downstream 64800 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 88537 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 252819 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 279972 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 833550 7853191 ~ 7853509 (+) True G207480

Expression Profile