RNA id: XM_026916195.2


Basic Information

Item Value
RNA id XM_026916195.2
length 6333
RNA type mRNA
GC content 0.47
exon number 6
gene id vat1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8163843 ~ 8200783 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCCTGCCAGGCGCGGGTCATTGTAGTCGTCGCGCGCATCTCCCAGCACTCCCTTcgctttctctcttcctccctgaTTTGTCTCCACGCCCTCAGGCGTTTAGCTCACAGCCGCACTGAACGCGTACAGAGGACTGCAGGTCCCGTTTGCGTGCTCACCGACGactctgtcttctttttttttcccctacaagCGTGAAACAGCCGGTTTTTGAGGCTTTTCTCACTCCTCCACTTCCATCGCACGCGCCCACCGACAGACCCAGCGCTTCTCAACATGTCAGGCGAAGACGCGCCCGCCCAGCAGCAGAACGCCGAGGAGCAAAAaccgcagcagcagcagcagcaggatggCGAGCCCAAAAGCGAGTCGCCCAAAACCGAGAACAAACCGGAGGCAACGCCCGCTGAACCTGTCGCTGCTGCTGCGGTTTCAGGCGAGGCGGCTGCAGCTGCAGCGGCGCCCGCGGACAAACCCGCCGAGGAGGACACGTTCAGCTACCGCGCGCTCGTGCTCACAGGCTACGGCGGCTACGACAAAGTGAAGCTGCAGGTGAAGAAAGGAAAGCCGGCGCTCAAGAGCGGAGAAGTGATGGTGCGCGTCAAGGCGTGCGGCCTCAACTTTGCCGACCTCATGGCACGCCAGGGGCTCTACGACCGTCTCCCGTCTCCGCCGGTCACACCGGGAATGGAGTGCTCGGGGATCATCGAGGCCGTCGGTGAAGACGTGACAGACAGAAAAGTGGGTGATAAGGTGCTGGTTCTGAACCGCAGTGGTCTGTGGCAGGAAGTGGCTGTGGTCCCCATCTCGCACACCTTCCCCATGCCCGAGGGGATGAGTTTCGAGGAGGCGGCTGCTCTGCCCGTCAACTACATCACCGCTTACATGATGCTGTTTGACTTCGGCCACCTGCGTCCCAACCAGAGTGTGCTCATCCACATGGctgcagGAGGGGTGGGGATCGCTGCCACTCAGCTCTGTAAGACGGTGAAGGATGTCACTATCTTTGGAACCGCCTCTGCCAGTAAGCATGAGGTCATCAGCGAGGGAGGAGTCACGCACCCCATCGACTACCGTACACGGGACTATGTAGAGGAGGTCCGCAAGATCAACCCCAAAGgtgTGGACATTGTCCTGGATCCCCTGGGTGGTTCTGACACCCATAAGGGCTACAACCTGCTGAAGCCAATGGGCAAACTCATCAGCTACGGTGCCGCCAACATGCTGTCTGGTCAGAAGAAGAACCTGTTCGCCGTGGCTAAAACCTGGTACCAGCAGTTCTCCATTCACACCCTGAGTCTGTGCCAGAGCAACCGTGCCGTCTGCGGCTTCCACCTGGGCTACCTGGACACAGAGCTCGTCATAGACGTCATGAACTCCTTGCTGGAGCTGTACCAGGAGGGCAAGATCAAACCCCGCATTGACTCCACCTACCACCtcgagcagGTTGCCGATGCCATGCGTAGGATGCAGGAGCGGGGCAACATCGGCAAAATCATCCTCTCCACCGAGCCCATGAAGGAGGAGGCCAAGAAGGAGGAGGCCAAGAAGGAcgagaaggagaagaaagaggacaagaagaaagaagacaaGAAGAAGGAAGACAAGAAGAAGGATGAGGccaagaaggaggagaagaaagaggaaaagaagaaggaggaggccAAGAAGGATGAGAAGAAAGCGGAGGAGAAGAAAGCGGAGGAGAAGAAAGTGGAGGAGAAGAAAGTAgaggagaaaaaggaagagGCCAAGAAAGAGGAGAATTGAGAGTTGGGCAGAAGTTAGGCAGGAAATTGGTGGCTGTGAATTGTGTTTGTCTTGGGAGTAGGGGATCATTTGAGtctgtgttgagtgtgtgtgtacgtgtgtgtgtatgtgatgttgGGAAGTACAGCGTAGTCCAGCTCTCGGCTCAACCCCAGGCAATTACTCTGGCCTTAAATCATCATCTTGCACTGAAATCTGTAATTGTTTATCCAGCCTTATATAAGTTGAGAACTCAAAAGCTGCtcactaactaacacacacacacacacacacacacacacacacacacacacaccatgtaacAGGGATATACCACTCTATTATGCCACTATATTTCTCTTATGTGTTACTTTTCCTGTATTCATGCATTCTTGTACTCTGTGCTGTTACTAATCTTTAACTGCGTGCCTTTTGAGGTATGCTGGATCAGTATTACACTGCCAAATCCACTACTCCATCACTTTTCCGCTCATCATTTTCTCACCTTCATCATTGCTACAACACACTACTAATATCTTGAGCATTCATTCTCTACCATTTCATATTTGGCTTAACTGCATTCTCAATGCTTTTTGTGTAATAGCTGCGTTACCCACAAAGGATTATGGGTAAATGCCAGGGTTGAGCAAGAGTCCTGTTGCCATGACTACAGTGTTCCATATGTGTCCTGTCCCCTTATTCCAATCCCCTACTGTCTCCCCAGTCACATCTGTTCTCTCCTTATTGGACCAGACTCTTTGACGGAGAAGTCAATCACTGAGCCCCGCCCATGTCGTTCACCAAGGCAATAAGGAGGAGTCAGTGTGGTTTCTGATTTGCTAAAAATTTCACGTACGCCTATTAAAGCTCAAAAAAATGATCTAATAGTGAATTCTTTAAAAAGCTTCAGTTTAAGGATCAGGCTGgaaataatgatgaatatgaCTGTGTTTTTCAGAAGTAATGACTATTCCAGGTTTTTAGAAGAATGCAGGGTTTGTGGGCCAGGAAAATGAAAGCGGCTGTgctacaaacattttattttaaggcACACTTTCAAAAACGCAAAAGAAACATAAGAACATGACATTATAGGATATCATATGATTTATATTCTGACAAAGACACTATGGTCTTTGCTGTAGTGGCCTGCTCATGCGTACAGTCCTGCTATTCATCACGCTGTACACAAGTCAAATCATTAATCTGTCGTTAAACATTGGCTGCTAGGATCTTAATGAACTCGGCTACAGAGCAACATTAGTGAAACGTCTCTCTCCACACATAggcatgcagacacacacattctcaaattattgtattaaagCAGAGACTCTGAAACACTCTGAGTTTGAGATAAACCCTGAATGGTGTTTCATTCCCGAGCCTCCTCCAGGATTCCGCATTATCTGGAGCATTCCGCTCCGATCCTTATGACCGCTGGCCTGTTTCCAGAGCAATCATTGTTTTTCTGATTCTctgcttctcctctctctctctctctctcgatctctctctctctctcgctcgcttgCGTTTTACCGTCAGTAGTTGGCATAGCAACAGGCGTTTGGCCAGCAAGTGATGACATGGTTTtgcacccacccacccaccaaTTCCAATCACTCCTACACATATCTGCACACTTTTCCCAGCTTTCATTCAATTAAATATTGTTAAGAATCTCTTTATATGCTGATTTGACATCTATTCAGGCTGCTGTGTCAGAGTCTAGTCACAAGGGCGTAACCTGGCACCCTTCCAACTCTGAAACCCGTCAGTCAAACCCACTGACTCCTCCCTCGGCTAAATTTATGCATCTGTAGTGCTCTTCTGCCTCTCATGGCGATATAGATGCACTGCAGCGACTTTATTTCTGTCCCTCCATCAGCGGGTCtggtttttgtctgtgtgtgaactgcagtgtgtttgtgagagtgtgtgttgtgtacagATGTGGTTGAGAGGTTGCATGGATGTCTCTGTCCTCAGGTCAGTTGTCAGATTTagatgaaaatgtgtttttcgtttttgttttttgttttttcctgtctCTACCTCCCTTATGCTATGAGCTAGCATGTATGAGCTAGCTCCCTCGTCCCCCCTCCTTGCGGTTTTATCTCTAACAAACATAACTTGTAAGCCCcacccccatctctctctctccccaatCCCCCCTGGTGAATGGCCTGTGTTTAGTTTGGTATTATTTGCACTCTGCTTGTGGATCTTAATGCACTTACAGGGATGGCAGTCCCACTCCCAGCCCCACTGTTCCTCAGGAGTCCCCTCCAGAGCTTTTTGAGGTTAGCAAATACACACTATGTGCTCTCTTGCATACACAACCACATATCCATGTACGTAATTTGTtccatacatgcatacatatatatgataGTCACAAATAGAAGAAACAGAACTTCATCTCAAACAGTTTGTTCATCACTGAAAGCTTGTCCATACATCCATGGAGGAGGTTACCCAGAATGCACCGGGAAGGGCGTGGCACTGCCATCCTTGCCTAAAGAGTGACGGTGTTCTGACACGAGACTGGCAACTGGATTCTGATGCGAGTTCAGTTTCGGGATCATTCTagttcatgttcatttttttttttgttgtgtatcTCTGGTTCTCTCCCTGTGTTCTTGTGAAAAGAGCTTCAGTTCTGAAGCACCACGTGACCCCGACTAACACTCCAGCGAAGGGTGTCCGTCCTCATTCTCTTACCTTTTGttgttttgcatcatttttttttttttttggttgttgttgctgttgttgctgtgtaGTCCTACTATTCAGTTTGAGTGGTTCTAAGTTGAAGAGGCTTCGCTGCACTTCTGTTCAAATGTGAGGAATGATGTTCTGTTGATCCTGATTAAGTGTGCCAAACTGTGCTTGAGGCTCTTGCCTTCACTCCAGCTATCCTTACTACACTGAACGACAAAAGAGAAGGAACGACGAGAATTATTGCTGGTTGCTTTTAAACTGACTGgcagtatattaaaaaaaaaaaaatctcaaactgATGTCGTACCTGTCGTGTGTGGTTGATCGCATCGCTGAAATTTACTGGTGCTTAAGAACTCCTGGCTTTTTCGCTAATCCATGCAAACGCTGTTTAGGTCTCACTGTGCCGATCGTTAACGAACGCTGGAATACctccacaaaaacacaaatacacacatactctcactGCCCTCTCTGGCACACCAGCTCTGTTCGGAAGGGCTGATCTATCAATCAGTTATTGCTAAATCTGTTAGTGTTTACAACTCAAAAGAAAGATCAGACAGTGCAGAACTGGCGATCAGACTTATTGTGTTAAGatacagcagaacattgtcAACTAATGTCAACctgctgtgaagaaaaatattaagttgtcagtgtattatttttattattttttttttttttttcgttcatACATACAACAACTGCACTGTTTGGACTGGATTCTAGTTGTAGAACCCAGGTTCCACCCCGGATCTTCCATCTCATTCTCTAAGCAGGGTTGTTCTGGTTCTTGAACCTCAGGCTGGGTGACATTAGAGCTATAGATTCCACCATTTCCTCTGTcatggtttcatctgactgtacagcaaaaaaaatcacttattcTGCAGTTCACCTCCAAGCTCAGTCCCAGTAGTATTAACATCTGCTTTATGACTGCATGCATTCACTGGCATGAGGTTTATACATTAGCACACGATTTGCATTTTAGTCCAGTTCCCTTTTTTTGGTTCAGAGACCCAAGATGAGCTTAGCTGCAGGTGTGCGTGTCTCTGGTGGATATGGAGCTAGCTGTGTGGATGATGGCCAGAGCGGTCGAGGTTCCATCGGAGCCACACTGCTTCCTCTCTCCATTCCACAGCCACTGTAACTTTCCCAGAACAGGAAACTCCCTTCAGGTCTGCTTTCAGCTTTTCAGAGCAGTGTTATTTGACTCAAGCCACTTGAGCTTATACATTTTACCTTCCATTTTTCCTATTTAAGCTACAAACTGACAAATCGATAAGTGaataattagcatttttagataTGACTAGGTGTGTGCTGGTTGACGGTAACTTACCAAATGATAAATTTAGGATTTAGtcatataaaatgtacaacttTTTTCCACCTTAGTTGTGGTGCCTATTATTACAGCGACATATTTGTAAGAACGAAGATTTCTATATAGATTCTTTAGGCGTTTATATATCAGGACCCCTATGATTGCCATGACATGACTCAACACTGCAGTTCCTAAATAGCTTCAAACAACAATCGCTCTCCTCTCTAGCTGCATTTGTATTAATCACCCTTTCTTCCACACACGTCAGAGATGCGACAggctgttttcttttgtttttctccgACTCCCTCCATCAGTGTACTCTCCAATGTATTTGAGACCCTGTGAAGGGCCGCTGCTTCTGTGCTTGACTCTGGGTTGGATCATGTGTGACTCACACAAAAGTGGTCAAGAGGACCGTAGAGCTCGTTTAATGCTTCTGTGTGTGATGTTACCATTATGCCTTACATGTTTTCCAGGACTAATAAAAGagcataacaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
K23167 VAT1; synaptic vesicle membrane protein VAT-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245851 lncRNA upstream 5662 8157944 ~ 8158181 (+) True G207610
TU245829 lncRNA upstream 20606 8120452 ~ 8143237 (+) True LOC117599010
XR_004579452.1 lncRNA upstream 21198 8120453 ~ 8142645 (+) False LOC117599010
TU245802 lncRNA upstream 128470 8033925 ~ 8035373 (+) True G207570
TU245778 lncRNA upstream 155432 8008196 ~ 8008411 (+) True trnas-cga_1
TU245858 lncRNA downstream 509 8201292 ~ 8201592 (+) True G207616
XR_003402951.2 lncRNA downstream 8515 8209298 ~ 8209867 (+) True LOC113528504
TU245854 lncRNA downstream 35950 8236733 ~ 8250981 (+) True G207612
TU245973 lncRNA downstream 86674 8287457 ~ 8289905 (+) True G207717
TU246111 lncRNA downstream 284853 8485636 ~ 8485935 (+) True G207845
XM_034309970.1 mRNA upstream 49258 8070714 ~ 8114585 (+) True mrc2
XM_034310023.1 mRNA upstream 101248 8047426 ~ 8062595 (+) True tlk2
XM_034310024.1 mRNA upstream 101248 8047426 ~ 8062595 (+) False tlk2
XM_034310185.1 mRNA upstream 121040 8031681 ~ 8042803 (+) True mettl2a
XM_026917299.2 mRNA upstream 135952 8010533 ~ 8027891 (+) True itgb3a
XM_026916182.2 mRNA downstream 11246 8212029 ~ 8217356 (+) False asb16
XM_026916181.2 mRNA downstream 11251 8212034 ~ 8218351 (+) True asb16
XM_026916463.2 mRNA downstream 18742 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA downstream 18744 8219527 ~ 8226005 (+) False tmub2
XM_026917167.2 mRNA downstream 110233 8311016 ~ 8358151 (+) True ngfra
trnas-cga_1 other upstream 155576 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 310334 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 864159 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 891312 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1047908 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 695835 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 860782 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1743523 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 2148619 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 2171632 10372415 ~ 10417881 (+) False G208781

Expression Profile