RNA id: XM_026916198.2


Basic Information

Item Value
RNA id XM_026916198.2
length 5205
RNA type mRNA
GC content 0.47
exon number 14
gene id lmtk2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10426059 ~ 10448685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTCTCgtcctctgattggctggagcGCACGGTTACATGTGACGTAGCCCGGGCGAACATGGCGCTCGAAAGCGGAGGTGATGCTGGACCGTGTCAACTAACCCTACCGTCTTAATTTTCGTCTGTTAACCGTTTAAATTCTATGAAAACCCAGTATAGATAATATGATTCCTCAAGTGACATAATGAACCAGTGTGGTGTTTTAAACAATGAAGGACGGCAGCAAGTGAGAAACCGCTGTCTACCGGTAACTAGCGTCCGCTAGGTTAGCACTGCTTAGCCGCACTGTTGATGGTCACGCTGCTAACGCTTTAGCCAGCTATGCTAGATGTTTTGGTTCTCCTATCACCAGGACCGTAGCAGTAGGTAGTTTTACACACAGATGACTCTTTTGTATTATTTACTTTGACAATAGTGTGTCCTAGTAGTTTAGAGGTGACTAGTGAGCTAGTCGAGCTGGGACCATGGCCAGGCTCCGTGTGTGGATGTTGCTACTCGGAGCGGCGCTTCTGGAGCTCGCGCAGCTGTGTGAAGGCGCGCCTCTTCCGCGTGCACAATCAGGGGATTCTGCAGATGAACCACATTTCCCTCTGAATCTTTTGCTggttgtgtctgtgtctgtcctGGTGGCCACAGTGGTGGTGCTGCTCAACTGCGTGACCTGCTGCAAAGAACGAGAGATCAACTTTAAGGAGTTCGAAGACAACTTTGAGGATGAGATCGACTTCACCCCTCCTGCAGAAGACACCCCATCTGTGCAGTCTCCAGCTGAGGTGTACACACTGGCTGTGCCGCAGGTGCCCATGCCTGGACCTCCACACCTCCAACTGCCCCGGATAGCAGAAGTCTCGACAGGCCCACATGTGGCACGCCACACTCTTAGTTACATTCAGGAGATTGGGAGCGGCTGGTTTGGCAAGGTTTTGCTCAGTGAGATCTACTCAGACCCCAGTATAGCCAGAGTGGTGGTCAAAGAGCTGAAGGCCAACGCCAGCTCCAAAGAGCAGAATGATTTCCTTCAGCAAGGAGATCCGTACAGGGTTCTTCGGCACCCAAATATACTGCATTGCCTTGGGCAGTGTGTGGAGGCGATTCCTTTCCTGCTTGTCTTTGAGTACTGTGAACTGGGGGATCTGAGAAGCTATGTTACTCAGCATGAATGGCTGTACAGGAACGGAGAGCTGCTGCAGCTGCAGAAGATGGCCTGTGAGATCGCTGCTGGACTTACTCACCTGCACAAGCACAACTTCCTTCACAGTGATTTGGCCCTGAGGAACTGTTATCTTACAACAGACATGACTGTCAAAATAGGAGACTATGGCATTGGCCCCTCAAGGTTTAAAGAGGATTACATCACCACAGAGGAGGACCAGTGTGTCGCTTTGCGATGGCTTGCACCGGAGCTCGCTGGTGAATTGCATGGAGGTGTGATAACATCAGAACAAACTAAGCCTGGCAATGTTTGGGCTTTGGGTGTGACCTTATGGGAGCTGTTTGAGAGGGGAACACATCCCTATACACATCTGTCAGATAAAGAGGTTCTTCACCATGTCATCCGCGATCAACAAATCAAACTCCTCAAGCCTCACCTCGATCTACCTTACTCAGAAAGATGGTATGAGGTACTGCAGTTTTGCTGGCTGCCTGCAGACAAAAGGGCCACAGCTGAGGAAATTCACCGGCTGCTCACCTACCTCCGGATGCAGGGGCAAAAAGAAATTGAAGATGACTTTGAGCAGCGTTGGAGCTCTCTGAAGCCTAATCCTTCCGCTCGGCAGACTACTGTCAGCCATTCATCCTTCCCTATCTTAGAGCAGTTTGATGATGGCCGAGAACCAGATGAGGTGCTCACTGTGACTGAGACGAGCCATGGTCTTAGTTTTGAGTATGTGTGGGAAGCTGCAAGACACGACCACTATGACAGCCACAATCGCTCTTCCGTGGAAACCACTCTCAATTACCACAGCATGTTCTTTCCTGTGCCACGGCAAGACATCCAGGCTCACTTCCCCGAGACTGGAGGTGAAGCAGAGGCTGAAAGAGTCCCAGGGACCCTGCCAGTGTTTGATGCACGAGAGGGCAACTCTGGGAACGAGTACTACATTCAGTTAGAGGAGCAAGATGAAAGTGACCTTGGAGTCATGGACAGTCAGAGCGCTGAGGGAGCCACTGCATCAAACAAGGAGCCGTATGTCATCTTACAGGACGTTAAGTTAGACGAGTCAAGCACAGATGCAGATTTCTTTCATCAGAGCATAGACTCTAAAGACTCATTTCTTCAGGACAGCCATATATGGTCCTCGAGTGAACATGAGAGTCCTTACCAAGCAGACATTTTCAGTGAGAAAGATTCAAAATTAGAGGAACCTCATTCGTTTAGAAGTGGTTTCATGGAGCTCCCGAAGATTCGATCTTTTCATGGCAACACCAAAGTCACAGTGGAGAATGAAGGTCTGAGCACTTCTTTTTTAGGTATCGAACAAGAAGCTGTTCATTCAGGAGACTTTGATGGAGGGAATGCGGATGTAATAAAGCTTCTAAACACAGAGAAACTGGTTGACAACTTTGTGTTCCTAAAAGAAAACAGCCTAATTAAAGAGAGCTCTGGTTTTCCAGAGTCTAGAGACATGCAGGAAACCGATGTATCGCTAAACCTCTTTGATGATGTAGATGCTACAAATAATTTGAATGGTACTGATGACCCCTCAGAATCTGTAGTAACTTCTGCACAGCTTAGGGAGGAATTCTTGGACTTGGTAAATCCAATTTTAAGAGATTTCCTATCACCTTTAAAAGAAAGTGAAACACTGGTGCCTTCAGATATATTCTCAACAGAAGAAACCTGTAGCAACCAGCTGCCAGATAAAACTGGCTCTTCAAATGAGGAAAATGCTAAATTAGGTGGTTGGATTTATTCTACTCCTGAGTCTACCTCTGAGAGCGCCGAGATCGCTGTTCCAAATCCAACCAATAGTCATCAGTTTAATGATGAAAATGCTGCCACAGACAATTTGTGCACAGATGCCAATACCTCTGGCCTTGAAGAATGCCTCACTGTCTCTGAGGAGAACAGGCAGGACATAGGAATTGTAGGAGAGTGTTCTGAGCAGAAGAGCCAGCTCTCTTCACCTGTAGATAAATCTACTGAAGGAGTAGATAGTGGTATAACTGAAGGCTTAACAAGTAGTGACTCCTTCAGTGACATGCTTTCAGATGGGGATGTCATCAGCAAAATCGAAGACGCTCCATTGCAAGAAGCTCAGGAAGAACGCTTTGTGGACAACCATATTTCTCAGGATATGTCCTCACCATTGATCTTGGACTCTTGTTTGGACCAGATCAGCCAGGACAGTCTTCTGGAGGACAGCATTTCATTCACTTTACCAGCTGTTGAGAATTCAGCTGAAACACCTGATTCATTAGATTCTCTGGACATGCATAGAGAGGTGGGGCATGGGAAAACACTGGATCCTTTCATTCATAAGCTCCAGCCACCTTACAGACCTGCTGACAGTGGATATGAAACCGAGAACATTGAATCACCTGAGTGGAATTCTCAACCAAGCACGGACGATGCCTCAgaggaaaatgtaaaaactgcTAAAGAAGATCCTGCTGCTGCAACGCTGACTCCTCCAGAAATAATAGTCTCTGAAGTGGACAGTGTACCTGATGTTCAGGAAAATGGAGATGATCTGCACCAAGAAATTGGTGATGCACCTGTTGGTGGAAGCTATAGAGACTCTGCTTACTTCTCTGACAATGAAGAGCTGGATAAGAAGAGCGATGACGTCAGCGGTGGAACTCCTGCTGATGCATCTCTTTGGGTTGAGAACTCTTCCACTGATCATATGAGTGGGTCGACAGAAGGGATCTCATCTTTCCCGGAATATGTAGCTTCTGATGATCAGCAAGAACACACTGGTCCTACAGTTGATGCTGATGTGAATTTGTCCAGAAAGACTGTCCAACCAGAGTTAGTCTTGAGTCCAGAAGAAGACTGGGATAAAGCAAAGCCAGCATCTGATTTAACTCAGAAAGAAGAGAGGTTGGAATCCTTTTCTGATCTCTTAACAGATCCACCTCTCTCCAGTTTTACCCCTGAAGCTCATGAAGATACATCCTCTACCTCAGTAATGCCTTCAGCCGAAAATGTAGTCCATGCAAAACTAGTGAGGACTTATGCTGGGGAAGGCCCAAAGAAAAAGGAGCCTGATATGGAAGGAAGATACCTTGGCAAGCTGGAGGGAGCTGCAGTGACCGGAGGTTCAGAAGACGGCATGGAGGCTGATGAGGAGGACGAGAACAGTGATGACTCAGACGATGACATGCGCGCTTACAGACTGCACAGTTCCGGCTCTGAAAGCGAGGATGATGCTGTGCATCCGGTGCCTGTTATAGTGTCTGACAACAGTGACGCCTGCAACCTCAAAAGCTTGTTAAAACCTAAATCGCTCCAGAAGGACAAATCCACAACAGCAtcgaacagtaacacagaaaaCAGAAGAGTAGTGTCCTTCTTTGATGATGTCACAGTTTACCTCTTTGACCAGGAAACTCCTACAAAGGAGCTTGGAGAGCACATATCAGGCTCCAACAGCCAGATGTCTGAGTTCAGCAGCCCGGTGGCCTCCTCCAGTTACCTAAACAGATTCACTAACTCAGAAAGCTCCACAGATGAAGAAGGTGGTGCTTTTGAGTGGGATGATGATTTCTCTCCAGAGCCCTCCTTCCTCCCTAAGTCAGGGAGTGATCAGTCTGCAAGCAAGGCCACAACAGCGTACTTCTCCCCACCCCCTGCAAGCCGCTCCTCAGAGCAGAGCTGGAGCAGCTCCACCACATACTCCCGCTTCTCCATCTCTCCAGCAAACATCGCCAGCTTCTCCCTCACCCACCTCACAGACTCGGACATCGAACAAGGAGGAAGCAgtgaagatggagagaaagactAAAGACTGATTGGATGCAGTATTTTGGCTAAAAGGACACATTTTGTAAGTGTTAAAGAGAATTCAGACACTTGCCTTGAAGGCTGTGATAAGCTTCTCAGGCAACATTATTTCTTTGAAGAGAAACTGCACAGAGTAATTCACTGGCATCAACGTCCTCTATTTTTGTTCCCTTCTTACACTTCAACAGATGAAATATTACTGTTTTTCACACCTTCATGAACTGTTTTTGAGTCTGTGGAATCGAAGGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247330 lncRNA upstream 8178 10372415 ~ 10417881 (+) False G208781
TU247337 lncRNA upstream 8178 10412984 ~ 10417881 (+) False G208781
TU247342 lncRNA upstream 83835 10341908 ~ 10342224 (+) True G208783
TU247238 lncRNA upstream 199556 10225583 ~ 10226503 (+) True G208701
TU247237 lncRNA upstream 204520 10221283 ~ 10221539 (+) True G208700
TU247485 lncRNA downstream 378340 10827025 ~ 10828913 (+) True G208911
TU247490 lncRNA downstream 406470 10855155 ~ 10857015 (+) True G208916
TU247664 lncRNA downstream 483374 10932059 ~ 10932428 (+) True G209067
TU247667 lncRNA downstream 494570 10943255 ~ 10947541 (+) True G209069
XR_004579343.1 lncRNA downstream 523036 10971721 ~ 10982090 (+) True LOC117598771
XM_026916301.2 mRNA upstream 84344 10298887 ~ 10341715 (+) True helz
XM_026916903.2 mRNA upstream 203185 10215045 ~ 10222874 (+) True LOC113528384
XM_026916863.2 mRNA upstream 230853 10192804 ~ 10195206 (+) True LOC113528352
XM_026916700.2 mRNA upstream 438286 9944306 ~ 9987773 (+) True rapgefl1
XM_026916963.2 mRNA upstream 499856 9917962 ~ 9926203 (+) True casc3
XM_026916762.2 mRNA downstream 26669 10475354 ~ 10484206 (+) True bri3
XM_026917195.2 mRNA downstream 299461 10748146 ~ 10798178 (+) True fam20ca
XM_034310092.1 mRNA downstream 360769 10809454 ~ 10846584 (+) False LOC113528286
XM_026916755.2 mRNA downstream 360769 10809454 ~ 10845365 (+) True LOC113528286
XM_026916957.2 mRNA downstream 450954 10899639 ~ 10909805 (+) True drc3
TU247340 other upstream 8178 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 8178 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 8178 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 446105 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 1362744 9061565 ~ 9063315 (+) False nupr1b
XR_003402977.1 other downstream 1088362 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 1118434 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 1710021 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 3027143 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 5364557 15813242 ~ 15813331 (+) True trnar-ucu_8

Expression Profile