RNA id: XM_034309976.1


Basic Information

Item Value
RNA id XM_034309976.1
length 3998
RNA type mRNA
GC content 0.53
exon number 25
gene id tecpr1b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10450724 ~ 10470518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttatccacatgAGCCAGATAAGAAACACAGCTTTCTATCACACATGTCATTCAATCCCTCAGTGATCCGAATAGTGTACTATACTCCATTTTATAACCTATTAATAaaacctaataaaaataattcggATAAACATATCCTAATGTATGTCACAAAAAGCAGGAGTGTAAATTATCGCTTACGTATCGCTCTTTGAGTTTGAATAATTGATTCGGTgacaaatgaataattaaaattcCTAAAGCTATAACAGTAACGGAAAAAACATACGAGCCTACACAACTGTCCAATCACACGGCAGGATTTTCCAGCTTTCCTGCTTGGTAACCAATCCGAGCTAAGCTCCCGCCCCTTCCTGTTGTCGGGCTTTGAGTGTGTTCTGATGTTGTGCTGGAGTAAGAGTGAACTGATGGCGCTGTTATAGAGAGGAGCTGTGGATGCTGGAGCGCTGCAGACTCGTTCACTAATATAAGTTTGGCTAGCTCTCTCCGCCATGCCGAGCTCAGTGTTTTGGGCTGTGGATGTGTATGGGAAGGTGTACAGCCTGTGTACCGCTAGGGGGCGCTGGCAGCAATGCAGGGAGAACCAGCTGGAGCTGAAACGCGTAACTGCTGCGGATCTGTGCTGCTGGGCCATCGGCTTTGACCAACAGGTTTACCTCAACGTGCTCCCCAGTGACGTGATCATACGTCACCAGGAGGAGACTTATGAGAACCAGAGATGGAACCCAGTAGAGggatacacagacacactcctgCTCACAGATCGCTGGCCTTGGACAGACGAGTTTGGCACGAAGCCTCAGCCGCTGCACAGCTTCCACCTTCCATCTGAGAACTGGGAGTGGGAGGGAGACTGGTACGTGGATGATGAGAGCTGTGGCAGAGAGTCCACATCTACCGGGGGCTGGGAATACGCTGTGGACTTCCCTACCACCTTCACTAAAGAGAAGAAGTGGAACTCGTGTGTCCGGCGCAGACGATGGCTTCGTTACAGGAGATATAAAGCACTGGGACAATGGGCCAAGGTGCCTTTAGACAGGGGTCGGCCTCCTCCAGAGCCCTTCACTGATATTAGCTGTGGAGGCTGGGACATGGGCGACAGACCAGAGAAACCCATCTCCCTGTGGGCTGTGTCTCAGCAAGGAAAGGTGTGGTTCCGTTCAGGCATTCGCCAGCAGAATCCAGAGGGGACAGTTTGGGAAAATGTCCCTGTCCCTGATTCCACAGAGGTGGCCCAGATAAGCGCCGGTCCAGGAGACCTGCTGTGGGCCGTGCTGTGGGACGGACAGCTTCTCGCCAGGACAGGCATCCACAAGCACTGCCCAAAAGGTGCATCATGGGTGATGGTGGATCCTCCAAGTAATACCAAAGTTGTCCATGTAGCAGTGGGGGTCAGTGTGGTCTGGGCAATCACCAAGGACAAGAAAGTATGGTTCAGAAGAGGCGTGAACTCCCACAATGCCACTGGCCTTGGCTGGATCAGTGTTGGTGgggagatgatgatgatcagtgtGGGGCCCAATGACCAGGTGTGGGGGGTTGGCAGCGAGGACAGGAGTCTCTATTTCCGACATGGTGTGACCCCCACTGAGGTCACAGGAAGGGCCTGGGTCCCTGTGTGTGCCCATGTGGACAACAGCCATACCACCGATAAGCCCAGTGACGTTTGCCTCATCAGTGCTCAAATTGCCGCACCTACCCAGGGTTCTGTGTTGGGCTGCGATGACATAGATAATGCTAACGTTCCCAAAGTCACCAGTGACAGTGTTGTATCGGCCCTGGTGGCTGAACACGGCGATCCTTTGCCTGAAGCAGATCAGGCGAAAGCGGAAGAGGCTAGTGTGCCTCGCCAGAAATCTGGGCTCCACTGTAGCCAACCAAAAGGCAGCGAGCTGCCATGGAGTAATGTAGATCTGGCAGAGATGAAAGTTCCCTCAGCCAAAGCGGCAGAGAAATCTGTGGCTGTGTATCCCATGGAGCTGGGAGAAACCATGAAACAGGAGGAGCGGCCGCCATGGGCATGGATCACTGCAGGACAATGTGAGATAGATTCCAACACAAGCATCAGCTGGCTGGAAATGCCAGatgcaggGCCTCTGTCTCCCTCCATCACTCCTGCTCTTAGCATCTCAGGGGCCCAGGGCCCATTGGCAGAGAAAACACACCGAGAGAAAGACAACACTATGGAGAGgTCTGTCAGtgtgaaaaaaacagtgatgtgCTGGTGGAGGGACTGGCAGCCCCATCAGttggaggaggtgtgtgtgaccCTGGAGCAGGTCAGGGGTGGTGGCACTCCCCACGACGACATAGTCTACatctactacacacacaaccaggAAAGGAAGTATCTATATGCTGTGATAAGGGAAGTCACAGCTCTCGTTCCAGTACACTGGGAGTCCATGTATGCTCTGGCTATCTATACAGCTGAGAGGACAAGGCAGAGATGGCCTATTCTACTATCTACAGAGTCCCAGCAAGACATGGAGACCTGGCTGTCTCTGTTGAATGAGTCTTGCTGTGAGTCCAGAGCTCTCCAGGCCCCTCCGTCCAAACAAGCTCTGTGGGCTGTTACCACCAAAGGGGATATCATGGTGCACGAGCCGTCACCCTGCTTAGAAGCTCCTGCTCAGTATTTACCCTGTGAACAGATGTTCTGGCGTCAGGTCCCTGGCCACCTGCATTCGGTGGAGTGTAACAGTCTGGGTGTGGTTTGGGGCATCGGCTATGATCGCACCGCCTGGGTCTACACAAGGGGCCATGGTGAAAACCGAGCTCAGGATAACAAAGTGAATCAGCAAACACTGACTGATGTCAGGAACGTTTACATCTATGAGAACCAACGCTGGAACCCTGTCACAGGATACACAAATAAGGGTCTACCTACGGACCGTTACATGTGGAGTGATGCCCTTGGAGTGAAGGAGTGCACCAAGGAGGGCACCAAACCCCCCTCCCCAGAGTGGAAATGGGTGTCAGACTGGGTTACTGACTATAGCACTCCAGGAGGAACAGATAAAGAAGGCTGGCAATATGCTGCTGATTTCCCAGTGACATTTCATGGTTATAAGACCATGAAGGACTTTGTTAGAAGAAGGCGATGGGTCAGGAAGTGTAAAATTACTATAACCGGGCCCTGGCAGAAAGTCCCACCCATCCCTCTCATTGATGTCACCATCCTGCCGTGTCTGGCCCAGAGCAGCTTGGAGCAGGTGCCTGTGTGGGCCATCAGTGAGAAAGGAGATGTCCTGTGCCGTCTGGGAGTCACTGCAGAGAACCCAGCTGGCAGCTCATGGCTCCATGTGGGGACAGATCAGCCCTTTAAGTCCATATCCATTGGAGGAGGACACCAGGTGTGGGCAATCGCGCGGGACGGAGCAGTCTTCTACCGCGGCTCAGTTTCAGCCCAAAACCCTGCAGGCGAGTGCTGGTACCACATCCCCTCTCCCAACAGACAGACTCTCAGACAGGTGTCTGTGGGCAGGACCTCTGTATATGCTGTTGATGAAACCGGCAATCTATGGTATAGGCAGGGTCTGACCCCTAGTTATCCTCAGGGTTCTGTGTGGGAGCTCATCTGTGGTAATGTGTGCAAAGTCTCGATTGGACCACTGGACCAGGTTTGGATAATCGCTGATAAGGTTCCAGGTCATCCAGCAGAGAGTTCTGGCACTGTGTGTCACAGGCTGGGAGTGCGGCCCATGCAGCCTAAAGGCTTATCGTGGGACTTTGGAATTGGCGGAGGATGGAAACACCTGTCAGTGAGAGGAAACTCCACCGAGGTCCAGCGTGTCGTCCCTCCCAGCCCTCAGACCAGCAGGAGCCAGGAGCAGGTGAATGGCAGTGCTGCGGGGTGTTAGACTCCTCACTAGCCCTCACTATCACTACTTCCCAcagcattcacacactctcacggaggcattttctgtttttgtgtttgggtgtctgtgtgtgtcaaatTAAGCAAGGCTTCtcttatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247554 lncRNA downstream 732 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 109050 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 160387 10221710 ~ 10290885 (-) True G208771
TU247295 lncRNA downstream 264020 10187036 ~ 10187252 (-) True G208758
TU247174 lncRNA downstream 384916 10063977 ~ 10066356 (-) True G208649
TU247571 lncRNA upstream 47827 10518342 ~ 10518947 (-) True G208980
TU247589 lncRNA upstream 163020 10633535 ~ 10634150 (-) True G208998
TU247803 lncRNA upstream 618498 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 748144 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 748153 11218668 ~ 11221366 (-) False LOC113528410
XM_026916206.2 mRNA downstream 24044 10420040 ~ 10427228 (-) False pvalb5
XM_034309978.1 mRNA downstream 24044 10420040 ~ 10427228 (-) True pvalb5
XM_026916203.2 mRNA downstream 33357 10415901 ~ 10417915 (-) True LOC113527991
XM_026916202.2 mRNA downstream 36504 10413005 ~ 10414768 (-) True pvalb4
XM_026916204.2 mRNA downstream 44192 10403780 ~ 10407080 (-) True pvalb8
XM_026916269.2 mRNA upstream 15220 10485735 ~ 10527286 (-) True baiap2l1b
XM_026916885.2 mRNA upstream 75806 10546321 ~ 10557800 (-) False nptx2a
XM_034309701.1 mRNA upstream 75806 10546321 ~ 10557800 (-) True nptx2a
XM_026916281.2 mRNA upstream 377186 10847701 ~ 10869084 (-) False srebf1
XM_026916280.2 mRNA upstream 377186 10847701 ~ 10869083 (-) True srebf1
trnac-gca_22 other downstream 66152 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 720022 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 976794 9466480 ~ 9474478 (-) False copz2
TU246806 other downstream 1031688 9409804 ~ 9419584 (-) False prr15la
XR_003402978.2 other upstream 961995 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1066045 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1095495 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 1229391 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 1285310 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile