RNA id: XM_026916204.2


Basic Information

Item Value
RNA id XM_026916204.2
length 719
RNA type mRNA
GC content 0.45
exon number 5
gene id pvalb8
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10403780 ~ 10407080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTCTGCCTGTAAGAATTCGATCCACAGACAGGTAACTTAAGAGTGGCCCATTGTCTCTGTGATCAGCCCTATATAAATCCCTCCTGCGCACAGGGTGCTCACCACACAGCCTTACCTCCACCTGCAGCATCCAGCACACTCCAACTTAACGGGACTATGTCGCTCACGTCCATCCTTTCCGCTGATGCCATCGACAGCGCTATCAAGGACTGCCAAGTACCAGAGTCCTTCAATCATAAGAAGTTCTTCCAGCTGTGTGGTCTCtccaaaaaaaatccccagGAAATAAGGACTGTCTTTGGCATTCTCGACAACGATGGCAGCGGCTTCATCGAGGAGGATGAGCTCAAATTCTTCCTGCAGAGGTTTTCATCTGGAGCTCGTGTGCTGACCGATAAAGAGACTAAGACCTTACTATCAGCAGCTGATGATGACGGTGATGGCAAGATTGGAGCTGAGGAATTCCAGGCCATGGTGCTCTCCTGAATGGTCAACCCTCCTCTTGTGTCATGGTTCATTTCAACAATGTTCTTCCTTGttattctgctttcttttaatttttggaAGCCCCTGATGATACAGACACAAAACAGACCACAGTTTATACTAGATTTGTAAATACCTGTAAAGAGATGAAATCCAAATCATCTCCCCAGTGTACGACTGACACAACATAAATAAttttgagtaaataaataaatgactaaactTTATGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23925 OCM; oncomodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247529 lncRNA downstream 61558 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 112895 10221710 ~ 10290885 (-) True G208771
TU247295 lncRNA downstream 216528 10187036 ~ 10187252 (-) True G208758
TU247174 lncRNA downstream 337424 10063977 ~ 10066356 (-) True G208649
TU247137 lncRNA downstream 486251 9914907 ~ 9917529 (-) True G208613
TU247554 lncRNA upstream 40656 10447736 ~ 10450540 (-) True G208964
TU247571 lncRNA upstream 111262 10518342 ~ 10518947 (-) True G208980
TU247589 lncRNA upstream 226455 10633535 ~ 10634150 (-) True G208998
TU247803 lncRNA upstream 681933 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 811579 11218659 ~ 11221378 (-) True LOC113528410
XM_026916003.2 mRNA downstream 19473 10381193 ~ 10384307 (-) False aimp2
XM_026916002.2 mRNA downstream 19474 10381193 ~ 10384306 (-) True aimp2
XM_026916162.2 mRNA downstream 30725 10360186 ~ 10373055 (-) True cacng4b
XM_026917043.2 mRNA downstream 48307 10345265 ~ 10355473 (-) True cacng1b
XM_026916857.2 mRNA downstream 107657 10230636 ~ 10296123 (-) False pitpnc1a
XM_026916202.2 mRNA upstream 5925 10413005 ~ 10414768 (-) True pvalb4
XM_026916203.2 mRNA upstream 8821 10415901 ~ 10417915 (-) True LOC113527991
XM_026916206.2 mRNA upstream 12960 10420040 ~ 10427228 (-) False pvalb5
XM_034309978.1 mRNA upstream 12960 10420040 ~ 10427228 (-) True pvalb5
XM_026916200.2 mRNA upstream 43644 10450724 ~ 10470514 (-) True tecpr1b
trnac-gca_22 other downstream 18660 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 672530 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 929302 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 984196 9409804 ~ 9419584 (-) False prr15la
XR_003402902.2 other upstream 44416 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1025430 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1129480 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1158930 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 1292826 11699906 ~ 11701101 (-) False zgc:162612

Expression Profile