RNA id: XM_034309978.1


Basic Information

Item Value
RNA id XM_034309978.1
length 1151
RNA type mRNA
GC content 0.41
exon number 7
gene id pvalb5
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10420040 ~ 10427228 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCCAAACACTTTGGAAACCTTAATATGTAATTTTGATGAATCACAGGATGTCAAGTGTGGACTTCAGGTCCTCAATTTCTACATCAGTCAGCAAAACAGGGAATACAGACAAATCAAGCAGACATACATCTGCTGGAAATCAAATCACTAAATGATAATGAAGAAGTCTGCATGGCATgcttgggaccagcactgagagtgcactgggTTGTGCAACCCCCATTGGCTCGGTTGGCTCCCTGCCCAGGAATTGAACGCAGGCCCTGGCGGTGAGAGTGCGGGAGACTCATccgctagaccaccagggaaccaccatatataaaagtgcagtaatccatgcaaattatatgatttgaagtggATCAAGTCGAGGTTTCTATTAGTTCATAGTTTCACGGTGGGTAACAAGGAGGACAGCTGCTTTCAAGAGACGCACTTATTCAGCATCAGAAGGAGGAAACAAGCATGGCATTTGCAGGAATATTGAAAGAAGAGGACATCGCTGCAGCAGTCCAGGCTTGCCAAGATCCAGGCACCTTCTCTCACAAGTCCTTCTTTGAACAAGTGGGGCTCCTTGGCAAATCAAACGTAgatggtcagaaggtgttcaaaGTCCTCGACCAAGACAAGAGTGGATTTATTGAGGAAGAGGAGCTCAAACTGTTTCTCCAGAACTTCATGGCAGGAGCCAGAGAGCTGACAGATGCTGAGACCAAAGCTTTCCTGGCTGCTGGAGATTGTGATGGAGATGGCAAAATTGGGATGCAAGaattctGTGTGCTGCTAAACTGAAACAATGATATAGCTACTGTACTGATGCTGAACACCTacaattttctttcttattcttaCTTATGAGAATCATAATTTTCAGTTGTTACAATTGGACTGAGagctgaattaaaaatatagtCTTTAATGACTGACctaatgaaatgtgaaaataaagtttagTACTTCACATTTTGTGTCTTGCATttcgttttttttcttgacaCACCAATGAAGACCTGTATTTTGGCTGTTAAATGGAACTAAGTTTTAATGAACAATAATTTGTCAAAattcacattatttaaaacagtaATTTGCTCTTTTTTATTCCCTATATGAGTGGATTATTAAGTTCTGATTGTTACAGTTATTAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247529 lncRNA downstream 77818 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 129155 10221710 ~ 10290885 (-) True G208771
TU247295 lncRNA downstream 232788 10187036 ~ 10187252 (-) True G208758
TU247174 lncRNA downstream 353684 10063977 ~ 10066356 (-) True G208649
TU247137 lncRNA downstream 502511 9914907 ~ 9917529 (-) True G208613
TU247554 lncRNA upstream 20508 10447736 ~ 10450540 (-) True G208964
TU247571 lncRNA upstream 91114 10518342 ~ 10518947 (-) True G208980
TU247589 lncRNA upstream 206307 10633535 ~ 10634150 (-) True G208998
TU247803 lncRNA upstream 661785 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 791431 11218659 ~ 11221378 (-) True LOC113528410
XM_026916203.2 mRNA downstream 2125 10415901 ~ 10417915 (-) True LOC113527991
XM_026916202.2 mRNA downstream 5272 10413005 ~ 10414768 (-) True pvalb4
XM_026916204.2 mRNA downstream 12960 10403780 ~ 10407080 (-) True pvalb8
XM_026916003.2 mRNA downstream 35733 10381193 ~ 10384307 (-) False aimp2
XM_026916200.2 mRNA upstream 23496 10450724 ~ 10470514 (-) True tecpr1b
XM_034309977.1 mRNA upstream 24044 10451272 ~ 10470516 (-) False tecpr1b
XM_034309976.1 mRNA upstream 24044 10451272 ~ 10470515 (-) False tecpr1b
XM_026916269.2 mRNA upstream 58507 10485735 ~ 10527286 (-) True baiap2l1b
XM_026916885.2 mRNA upstream 119093 10546321 ~ 10557800 (-) False nptx2a
trnac-gca_22 other downstream 34920 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 688790 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 945562 9466480 ~ 9474478 (-) False copz2
TU246806 other downstream 1000456 9409804 ~ 9419584 (-) False prr15la
XR_003402902.2 other upstream 24268 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1005282 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1109332 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1138782 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 1272678 11699906 ~ 11701101 (-) False zgc:162612

Expression Profile