RNA id: XM_034310206.1


Basic Information

Item Value
RNA id XM_034310206.1
length 1596
RNA type mRNA
GC content 0.44
exon number 16
gene id rgs9a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18877674 ~ 18899981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATCCGGTGTAAAATCATCTGAGCAGAAATTGAACATAACTTCTATTCCACACGTCATCGCAGGACAGGACATTCTTGCATGGATTGCCAGTTATATGAAGGTGGATAATCAAGGCTCGGACAATTGGCACCATGTTAGTTGCTTTTGGCTTCATCTACCCACTGCAAGACCACAAAAGACTCATCCTCAAGCCAGATGGCAGTCTCTATCGCTTTCAgACACCGTACTTCTGGCCTGTGCAGAAATGGAAGGCAGAAGACACTGATTATGCAATTTATCTGGCGAAGAGAAACATTCGAAAGAAGGGGACCCTTGATAATTATGAACAGGAGAACTACAACAACCTGCACAAATGGCTCAACCACAAATGGGATTTTATTGTGATGCAAGCCAAAGAGCAATACAGGGCAGGAAAGGAGAGGAATAAATCAGACCGGGttgtgtttgattgtcaggAAAGGGCCTACTGGATAGTACACAGGCCTCCACCTGGAACTCACACTGCCATGGACTACGGCATGGATCGTCTCATCAATCCTAACACAGAAGAGaAAAAAACCTTTGACTACTATAGACGAATTATCATCTACACGCAGCAGGTAATCATGAGACCAAGGGTCAAATCTTCAGTGTCCATGGGAGCCTTTGTGAAATACATGACAACATATCAGGACCATGATCCATTTCTGAAACCGTGTGTTCCCAGCAACCCCTGGCAGACTGATGATGTCACATACTGGGATCTGAACATGAGAAATGTCGAAATCCCTACAAAGATGAGAGTTGAGCGCTGGTCCTTCAGCTTTTATGAGTTACTCAACGATGCACGTGGCCGCGCCGACTTCAAACTCTTCCTGAAGAAGGAATTCAGCGGTGAGAATTTGGCTTTTTGGGAGGCTGCTGAGGAGATGAAGTGGGGAACGGCAGCATCCATGTCTGAGAAAGCTGAGACCATTTTTAAGACGTTTTTAGCCCCAGGAGCTCCACGTTGGATTAACATTGACGGTCGGACGATGGGACTGACAGTGAAGGGTTTAGAACATCCACACCGCTACGTCCTGGATgcagctcaaacacacatctTCATGCTGATGAAAAAGGACACCTTTTATCGCTATCTGAAGTCACCAGTTTACAAGGACATTCAGAAAAAGGCGATCTCACCCGCACCACATAACTTCACTGATGCTCAACTGGAGCAAAACGCTAGAAACCGTAAGCCCAGCATCGACCCCATCATCCTGTGGCAGCAGGAACAGGAGGAAAAAGCCAAAGCAGCTGCCGCGGCCGGACCCATCGATATTAAAAAACTGATGGCCAGCAAACTGGACCGCAAGTGATGGAGTTTAACGGAACTGATTTTGATTGACTTTGATATGAGGCATTAGATATGAATCTCATTATATGTTGTGTGTTCATCTCTATATTAGATCTAACTAGTGAAACTGTGTTTATGATATTTAGAGAAAGTACAGAATGATTCGTAATGACCGCAGTTTTGCTTAGAGTATTGATttctttaaaactgaaaaatgttcatttttcctaTATAAATGACATAGTAGGCATGTGGTTATATTTGGTTATGTGATGC

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252523 lncRNA upstream 165522 18706417 ~ 18713626 (+) True G213221
TU252491 lncRNA upstream 313366 18517313 ~ 18565782 (+) True G213191
TU252492 lncRNA upstream 344804 18530359 ~ 18534344 (+) True G213192
TU252294 lncRNA upstream 451522 18425194 ~ 18427626 (+) False zgc:163143
TU252634 lncRNA downstream 59049 18959030 ~ 18960740 (+) True G213314
XR_004579329.1 lncRNA downstream 179481 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA downstream 179629 19079610 ~ 19081890 (+) False LOC117598754
TU252813 lncRNA downstream 207229 19107210 ~ 19161120 (+) True G213475
TU252837 lncRNA downstream 371350 19271331 ~ 19271589 (+) True G213498
XM_026916887.2 mRNA upstream 42947 18829293 ~ 18836201 (+) True clpp
XM_026916083.2 mRNA upstream 77331 18793304 ~ 18801817 (+) False yipf2
XM_034309923.1 mRNA upstream 77331 18793305 ~ 18801817 (+) True yipf2
XM_026917184.2 mRNA upstream 181555 18633498 ~ 18697593 (+) False tnrc6c1
XM_034310064.1 mRNA downstream 15873 18915854 ~ 18919942 (+) False smim22
XM_026916707.2 mRNA downstream 15885 18915866 ~ 18919942 (+) False smim22
XM_026916705.2 mRNA downstream 15885 18915866 ~ 18919942 (+) False smim22
XM_026916706.2 mRNA downstream 15885 18915866 ~ 18919942 (+) False smim22
XM_026916001.2 mRNA downstream 38590 18938571 ~ 18954755 (+) True engase
XR_004579361.1 other upstream 537211 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1769873 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2733764 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2910389 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 3065817 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252614 other downstream 14745 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 14745 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 244093 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 401374 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1006221 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile