RNA id: XM_026916217.2


Basic Information

Item Value
RNA id XM_026916217.2
length 1757
RNA type mRNA
GC content 0.43
exon number 2
gene id hoxb13a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9767867 ~ 9769918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGCGTCAATGCAGCTACGGCGATGAAACCGTGTGTCCTGCTCTGGAATAAGGTCTTTGCGCGATAATTCTCTGTCCGAATGGTACTCGTGCTATGACCACCTCCCTGCTCCTGAATCCTCGTTGGGCGGATACTGTAATGTTTGTGTATGAAAACAACTTGGATGAGCTTAACAAGAACATGGAAGGTCTGGTTGGTAGCAGCAATTTCGCGGCCAACCAGTGCAGGAATCTGATAGCTCACTCAGCTCTGAGCGGTCACCCTTCCAGCCTTGTGCATGGCTCCGGCTATTCCACGGTGGACGTGAGTACCTCGAGTTCAGGAGAAACGAGTAAGCAATGCACTCCGTGCGCAACGGTACCTCAAGCTTCGTCCACGGGGCCTATACCTTATGGCTACTTTGGCAACAGTTATTATCCCTGCAGGATGGGGCGGGGTTCGCTCAAGACTTGCACGCAACCGAGCGCACTTGGCTACTCTGCAGAGAAATACATGGACACCCCGGTCACATCTGAAGAATATCCCACCAGGGCCAAAGAGTTTGCCTTTTACCACGGCTACCATGGTCCGTATCAGTCCATGGCCAGCTACTTGGACGTGTCCGTGGTACAGACACTAGGGACCAGCGAGCCAAGGCACGATAGTCTTCTCCCTATGGACAGTTATCAACCATGGGCTCTAGCTAATGGATGGGGAGGTCAAATGTACTGTTCCAAGGACCAGAGCCAAGCTGGCCATCTGTGGAAATCTGCATTAGCAGATGTTGTTGCCCACCAACATGACGGGGGCTCTTTTCGCCGAGGTAGAAAGAAAAGGATACCGTACACCAAAGTGCAGCTAAAGGAACTGGAGAAAGAATATGCAGCCAACAAATTCATCACGAAAGACAAGAGGAGAAAGATTTCTGCGGTAACCAACTTGTCCGAGAGGCAGATCACAATCTGGTTTCAGAACAGGAGggtaaaggaaaagaaatttgTTGCCAAAGTTAAGACCAGCGCTCCATAATGGGGATTTGAgcaacaagacatttttttttatctgtgactcagattaaagaaaaaagtcgACTTGACTTTTACTGGGATTGTGTGCTCTCTTGCCTGCGTATTTGCATCGCGAACTAATAAAAGGATGAACTAGGATAGGAcaacataaagaataaaaaagactaTATCCCTGTAAAAATGCCTGCCAAAATATGCCTCTGTGGGATTTTACATACAAGCTAAATGTTAGAATATTAGGCATGTCGATGTTGTTACTGCAGTAGAAATGTAGCTTATTAAACTATATACTCATTAATATTCTTTATAACATACTTATATGacatatattaaatgtatatgtatatatacaattaAAAATCACGTTAATCTTCAAAGTAATTTACAGCCTTAGCTAATTTTCATAATTAACTCATTTGTAAGTTGTGCTAGTGGATACGCCAAGTGTTGTCCCGTAAACGTCCCATTTACGTTCATGTTCATTTCAAACAAATCACAGTCTTGCTGGGGTGCTTAAACAGTCCTGTCAAGTTGTCAACCTGCAACGAGTTTGTGAgcacttctgtgtttttttttttcatcatttttttgaCAATCCTAGACACGGGACTTTCTTTTCTCTATGATACACCATATTGTAAATATGATACAACATATTTACAATTGATTTGGaccaaacatttaaaataaaaatttgtgtAAACGTATCATGCTTTGCAATgcgtaaataaaaaaaagataagaacTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246954 lncRNA downstream 19828 9746496 ~ 9748039 (-) True G208473
TU246919 lncRNA downstream 36420 9729869 ~ 9731447 (-) False hoxb8a
TU246838 lncRNA downstream 262117 9494623 ~ 9505750 (-) True G208391
XR_004579419.1 lncRNA downstream 321763 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA downstream 321817 9441986 ~ 9446050 (-) True LOC117598997
XR_004579453.1 lncRNA upstream 59709 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA upstream 59709 9829627 ~ 9843423 (-) False LOC117599011
XR_003402943.2 lncRNA upstream 67332 9837250 ~ 9838412 (-) False LOC113528446
XR_003402942.2 lncRNA upstream 67332 9837250 ~ 9838251 (-) True LOC113528446
TU247081 lncRNA upstream 71109 9841027 ~ 9927942 (-) False LOC117599011
XM_026916726.2 mRNA downstream 26534 9737003 ~ 9741333 (-) True hoxb9a
XM_026916728.2 mRNA downstream 35301 9729851 ~ 9732566 (-) False hoxb8a
XM_026916727.2 mRNA downstream 35301 9729851 ~ 9732566 (-) True hoxb8a
XM_026916032.2 mRNA downstream 39013 9724361 ~ 9728854 (-) True hoxb7a
XM_026916420.2 mRNA downstream 50398 9715010 ~ 9717469 (-) True hoxb6a
XM_026917222.2 mRNA upstream 126948 9896866 ~ 9904394 (-) False nr1d1
XM_026917220.2 mRNA upstream 126948 9896866 ~ 9903254 (-) False nr1d1
XM_026917219.2 mRNA upstream 126948 9896866 ~ 9903253 (-) True nr1d1
XM_026916517.2 mRNA upstream 218198 9988116 ~ 10033085 (-) True ppp1r9ba
XM_026916760.2 mRNA upstream 272263 10042181 ~ 10061921 (-) False col1a1a
XR_004579397.1 other downstream 36617 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 293389 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 348283 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 615131 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 681578 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1662592 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1766642 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1796092 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile