Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916218.2 |
| length | 836 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | spc24 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 11745491 ~ 11751424 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0000777 | condensed chromosome kinetochore | cellular_component |
| GO:0031262 | Ndc80 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248316 | lncRNA | downstream | 80362 | 11664485 ~ 11665129 (-) | True | G209646 |
| TU248307 | lncRNA | downstream | 97494 | 11642168 ~ 11647997 (-) | True | hmox1a |
| XR_003402897.2 | lncRNA | downstream | 119423 | 11619540 ~ 11626068 (-) | True | LOC113527962 |
| TU248298 | lncRNA | downstream | 119678 | 11619646 ~ 11625813 (-) | False | LOC113527962 |
| TU248294 | lncRNA | downstream | 128303 | 11610634 ~ 11617188 (-) | True | G209624 |
| XR_004579362.1 | lncRNA | upstream | 94149 | 11845573 ~ 11879417 (-) | True | LOC117598828 |
| TU248548 | lncRNA | upstream | 316830 | 12068254 ~ 12068622 (-) | True | G209829 |
| TU248549 | lncRNA | upstream | 317389 | 12068813 ~ 12069180 (-) | True | G209830 |
| TU248551 | lncRNA | upstream | 318872 | 12070296 ~ 12070602 (-) | True | G209832 |
| TU248558 | lncRNA | upstream | 325248 | 12076672 ~ 12077073 (-) | True | G209839 |
| XM_026916973.2 | mRNA | downstream | 44319 | 11699849 ~ 11701172 (-) | True | zgc:162612 |
| XM_026916692.2 | mRNA | downstream | 99721 | 11642157 ~ 11645770 (-) | False | hmox1a |
| XM_026917058.2 | mRNA | downstream | 216049 | 11520766 ~ 11529442 (-) | True | slc16a5b |
| XM_026916933.2 | mRNA | downstream | 227404 | 11509731 ~ 11518087 (-) | True | LOC113528402 |
| XM_026916453.2 | mRNA | downstream | 250004 | 11493275 ~ 11495487 (-) | True | LOC113528102 |
| XM_026917283.2 | mRNA | upstream | 1619 | 11753043 ~ 11763823 (-) | True | kri1 |
| XM_026915997.2 | mRNA | upstream | 21655 | 11773079 ~ 11785047 (-) | True | ldlra |
| XM_026916879.2 | mRNA | upstream | 39151 | 11790575 ~ 11809016 (-) | True | smarca4a |
| XM_026916880.1 | mRNA | upstream | 39151 | 11790575 ~ 11804821 (-) | False | smarca4a |
| XM_026916882.2 | mRNA | upstream | 39151 | 11790575 ~ 11796996 (-) | False | smarca4a |
| TU248329 | other | downstream | 44390 | 11699906 ~ 11701101 (-) | False | zgc:162612 |
| XR_003402973.1 | other | downstream | 179363 | 11566010 ~ 11566128 (-) | True | LOC113528658 |
| XR_003402963.1 | other | downstream | 208813 | 11536560 ~ 11536678 (-) | True | LOC113528647 |
| XR_003402978.2 | other | downstream | 312863 | 11432510 ~ 11432628 (-) | True | LOC113528663 |
| XR_003402902.2 | other | downstream | 1274973 | 10451496 ~ 10470518 (-) | False | tecpr1b |
| XR_003402968.1 | other | upstream | 4401 | 11755825 ~ 11755923 (-) | True | LOC113528652 |
| XR_003402971.1 | other | upstream | 274078 | 12025502 ~ 12025572 (-) | True | LOC113528656 |
| TU248755 | other | upstream | 548581 | 12300005 ~ 12315469 (-) | False | LOC113528332 |
| TU248759 | other | upstream | 582434 | 12333858 ~ 12339269 (-) | True | msrb1a |
| XR_004579428.1 | other | upstream | 797405 | 12548829 ~ 12559213 (-) | False | tom1 |
