RNA id: XM_034309784.1


Basic Information

Item Value
RNA id XM_034309784.1
length 2660
RNA type mRNA
GC content 0.45
exon number 20
gene id pik3r6b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12593577 ~ 12612926 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGTCCGCCTCCCCGCTTGGCCCCATCTCTAGCAATACTCACGCAAGTTTCACACATGCTAATATTAAGAGGAAGAGAAACTTACTGACAATGAGCTCAATGTAAAGTTTTGCTTACTGGCAGCTATACTAAGGAAGGTATCTGAAGCCTGCTGGATTTGGATTAATCATTGCTGTTTCATCCAGGGTTGAAAGTTTTTTGAGTTGCAGTATGACTCATGTCTTTCATGTTACGTGGCGCTAACTCTAAGTGTCAGAACTCCGATGGAGAAAACAGATGTAGAGTCGAGCCTCTATCAACGTGTTCATGCCATGCTCAGAGAACTGGACACACACGCTCAAGCTGGCTCAGCCTGCAATAAAGGGATGCTAAGATGGACGCTGCATAAAAAGGTGGAGAAATATCCCTCTACTAGCATCTCGCTACTGAGGGTCCTTGTTAAGGAGCTTGAAAAGgCAGAGAGGATTGACTGCAAAATTCGCATCATTCCTTTGCTGCACACTCTAGCTTATGCAGTAATACAGTCTGCTTACATTCCAGACGAGCTGTGTGAAAGGATATATGTATGCCTAAAACGTCTGGTTACACTACCGGAGCCTTACTGCAGCGTGGGCCTTAATTATgctaaaaacatgaaaatagaACAAAACATCCCAGGTGCTCTGTATCAAAGAAGAGTCATTGCTGAACACAGCCTAAAGAATGAACATTATCCTCTTCATGAGAGAGTGTTTGTATTTGCGGATCCAGCCGTGTTTCCTGAGACACTGTTAAATGCAGTGAGGGCTGATGTAGAGTGTGGAGCTTTGGACTGGGACACACTGAGCCCTCAGCGCCGGGTTCTACTGCACACACTACAAGCCGGACTGGGGAGAGAATGCCATGGGAGACAACTTACACAAGCCCTGGAGGAGTTAGGTGAAGACATGGAAAAATACTTCCAGGATGTTGTGGCCATTGTAGAGGAGAGAATGATGGATGGAGGTTCAGAATGTGACCAGTACAACGCAAGATTACAGCAACTCTATGATGAAATCATTTGCTCTGCTAGCACAGAGCAATCATGTACTGCTAGTCTGGTTGGAACTCCACTGCCCAGTCCTGAGGTTAGCTTCCATGTCTGGACAAAAGAAGATGAGATATGGAACGAGATGATAAACTTCACTCTAATGAGCTCTACACATCGGAACTCTGCACTTCTCGAAGAAGAAGACAGCAGACGTGCTTCCGTCATCTCCACCATATCCAGAGACAGTGGCATAGAGGGAGATTTGCCTTTAAATGAGTTCTCCTTTCTGATGGTTGAGCCCTCTGGTGGACTGGAGGTCCAGGAACAGCAGAAGAGTTTATCGTTTTCCAGGAGGCCATGTGTGAGGTGGCCAAAGGCTGGGAACAGAATGACTTTAATGATGGAGGCCATTAAGGAAAGTGGAGGAACAGGGGGAAGTGGAAGCTCTATTCttaaagaagagaaaaactttACTGCTCGTGTTGTGGTTATGGGTGATGACAGCACTCTGGGTAGGCTGGCCAAGGCTTATCACACTATACGAAAAAAGGAGATGCGGAATTTATTTCTGACAAAGAGAGTCAACTTGGAAATATACTATGTTCCTGTCACTAGCCAGTCCAATACAGCTTCTTCAGTCCAGGAAAATGCTTCAGCAGATGTAGACAGGCTTACAATTGCAGCATCCTTGGGCAGTGTGGATCCATGGTATAACTCCAACATTAACAGTCTGGGAGCCATGATCCTGAAACTAGCTGAAACGCACTCCAGTGTTGTCGGGTCTTCAGAGCCCAACTCCTTTCTTTTGGACATCATCTCATACTACACGCGCACAGCACAGCAGCCTGTCCACATACCCATTTACACTGTTAAGATTTCCTTCTCTGGTTTGGATTCTAAAGTTGTGGaggaggtgtttgtgtgtcagctTGACATGGACTTTCCTGGGTTCAAGCCTCTGAGAGTTACATTTAGAGACACAATCAGGGgatCAGTACGATATAAGAAAAACATGCAAGAAGAGTATGGTGTAGTTGTGGCTGTGAACTACAGAAAGGCCTCCATAAGCAATCGAGAAGTGGACAGAGGAATGTCTTTAATAACGTGCGGCGTGTCAATCTGTACAGCTCCACCAAGTGGAACCAAAAgtcTTGAAAGTCTAAGTGTAGATTTTCGTGATCCAAATCCTACCAGACCTCCTATGTCTACCCTTAGAGTGACCAACATTTGCATCAGAGCCCTGGagaagaaaacatttactgtatgtcTGGACAAAGACTCGAGCAGGACCTTCAAAAATGTCCAGAGCATAGAGGTGTCTCCATGCACAGACCCTGGATACTCTCTTCAGAAGAGCAAGTCTAAACACAGTCTGATGGAGGACGACTCGGGACTGAGCAAATTCCTGAGCAAGACTTTCTCTTTACCCATCAACACCTTCTCTGGAGCTGTTCAGTGACAATAATGCAACAATCATGCACACTCCTGCCATTGATCATGAACTCTACGGATTGAAATCACATACctctgtgcgtgtgtctgtgtctgtggcaTCTCACCCAATACAGACATTACACAACAACAGTTTCTTGTTATTGCTGTTCTGCGTCTGATTGTGAATACCTCTGTATGTTGTCTGTTGgattattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248929 lncRNA downstream 6488 12586431 ~ 12587089 (-) True G210123
XR_004579344.1 lncRNA downstream 129699 12446461 ~ 12463878 (-) True LOC117598772
TU248758 lncRNA downstream 259915 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 294600 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 356385 12236974 ~ 12237192 (-) True G209961
TU249181 lncRNA upstream 257836 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 259498 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 312183 12921937 ~ 12923464 (-) True G210350
TU249177 lncRNA upstream 316891 12926645 ~ 12928808 (-) True G210348
XR_004579372.1 lncRNA upstream 337556 12947310 ~ 12949117 (-) True LOC117598834
XM_026916093.2 mRNA downstream 2072 12587675 ~ 12591505 (-) True mfsd6l
XM_026916918.2 mRNA downstream 10211 12562950 ~ 12583366 (-) True zgc:171844
XM_034310226.1 mRNA downstream 34365 12546333 ~ 12559212 (-) False tom1
XM_034309972.1 mRNA upstream 437565 13047319 ~ 13063983 (-) False ilf3b
XM_026916474.2 mRNA upstream 437565 13047319 ~ 13062742 (-) True ilf3b
XM_034309973.1 mRNA upstream 439816 13049570 ~ 13062742 (-) False ilf3b
XM_026916475.2 mRNA upstream 440479 13050233 ~ 13062742 (-) False ilf3b
XM_026917297.2 mRNA upstream 486505 13096259 ~ 13104829 (-) True gcdhb
XR_004579428.1 other downstream 34364 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other downstream 34364 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other downstream 34364 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other downstream 34364 12549120 ~ 12559213 (-) False tom1
TU248759 other downstream 254308 12333858 ~ 12339269 (-) True msrb1a
trnas-aga_12 other upstream 216704 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579330.1 other upstream 785712 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 1394415 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 1410494 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1878067 14487821 ~ 14490775 (-) True LOC117599009

Expression Profile