RNA id: XM_034310111.1


Basic Information

Item Value
RNA id XM_034310111.1
length 3239
RNA type mRNA
GC content 0.50
exon number 25
gene id cep112
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15208106 ~ 15342947 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacactcattcacatctagcaGCAATTTAGCATAGGCAATCGACTACATGCatgttttggacagtgggaggaaaccggataaccctgaggaaacccacgttAACATCGGGAGAACATGTGAatttccacacagacagatcaggattgaaccagggaccctggagcagtGAGACAGTTACCCTTAGTGCAAACTTTCCAATAGAGGACATGATGAGTAGAGAAGAGGACTCTTTGGAGAAACTGGACTCTGAATTTGATCACTACTTAGTTGACATGAAACCCTTCGTGCTCAGGCTTCCAGACAAATCAGAGCGTCAGCGTTGTGCTCTGTGGATTAAGAAGCTCTGTGATCCCGTGGCGTCCGGCTCTGGGCTGATGGGAAGGAAAAATCGCAACGCATACGCCAGGCTTCTTCTGCACATGCTCAGAAAAGGAGTCCTCGAGGGACCGTTTACCTACAGACCTGAAGCAGGAAGCCTCAAAACTTTACCAACATacatgTCAGTGTACTATGATGAGCCGCTGGCGTCCAGGTCTCGAGCACAGAGCTCCGCCATGCTGCCAGACTGGGTTTCTGGTGAACTGGATCGTGATGACATGTGGTCCGGTCTGCTGAAGGACTCCTCTCCACCTCACCCAAACTCAAACAGAAGGAGAAATCTGTTCAGTCACAAGTCTCCAACCAGACCTCTATCTTCCAGTCCACTCAAACCCACTGCCAAAGAGGACAATAGGGATGAGCAACTAAGAAGACCCTCGTCTGATGACAGTGACTTAGAAGCCCGTCTCAACAGCTGGAACCTTGGGaCTGAAATGAGGACCAAAGTTCTGGAGGCCAAATACCAAGAAGAGAAGCTGAAGCTCCAGCAGAGACATGATGCTGATGTTCAGAAGATTTTACACCGTAAGAATGGCGAGATTGAGGAGTTGAAGAACTTGCACCGGTCCAAGCAGAAAGAAGCAGAGGAAGCAGTGAGAGCAATGGAGAAAAAAGTTCAAAGCTTGCTGCGCGAGTCCCAGGTCATCCGCCAGAGCAAAGACAAGCAGATCGCAGAGTTGAAGAAAATGTCGGATCAAAGTGCTGACTCTCTGAAAAACGAATGGGAGAAGAAGCTGCACACTGTCGTGGCTCAGATGGAGCAGGAGAAGTTTGAGCTGCAGAAGAAGCACACAGACAGCATccaggagctgctggaggacACCAACCAGCGGCTGGCCAAAATGGAGGCAGAGTATGGCACCCAAGCACGAGCCACCGAGCAGACAGTGCGGGATCTGGAGGCGCGGGTGAAGCAGCTCTCAGTGGAGGTGGAGAATGGCAAGTTGCTCAGGCAGAAGGTCACACAGGAGAAAGCCGAGCTGGAGATCCACATTGCAGCCATCAGTGCTGAGCTTCAGGATGCCAACTGcaggaatATGACTCTTCAGAGGGAGAAGGATCTACAGAGTGAGCAGCATGAGGATGCACTACAAAAGCTCCAGGCCAAACATGACGCAGACATCAGCCACTTTCAGCAGGAGCATGCACTGTCTGCAGCCAAGGCGTCTGAAGTGATCGAGGATCTGGAACAGATGGTGGCTCGGCTCAAACAGCAGCTGCGAGACAGCGAGCACCAAAGGCAAAAGCAGCTCAGGGAGCTGGAAAATAAGATGCAGCATGAGAAAATGGACCTGCAACACACCTGTGACAAAAAGGTGCAGGCTCTGCAGGCCGAGCTGGAGAAGGAGCGTACTGAAGCCAGAAAAAAGAGCATGAAGTTGGAAGAGGCACTCAGGGAAAAAGAGGATCACATGAACCGCCTAAGAGAGTCCCAGAGACAGCAGGCCCAGCAGGCAGAGAGCGCTTTGGAGAGCTTTAAGAAGCAGGTGGAGCTCAGCTCTGAAAAAGCCTATGCTGACATGAAGCAGCAGATGGAAAAGGTAGAAGCTGATCTGTCCCGTTCTAAGTCACTGAGAGAGAAGCAAACAAAGGAGTTTGGCCACCAACTAGAGGAGCTCCAACAGAAATATGAGCAGCAGATTATGGAGCTGAAACTGCAGCATGAGCAGGAGAGGACACACCTACTCCAGCAACACAATACTGAGAAGGACAGCCTGGTCCAGGATCATCAGCGGGAGATTGCTAGTCTGGAGAAGCAGGCGCGGTCCGCCATGGCCCAGCACCAAGCACAGACCCAGGAATGGAGAAAGCGGGATGGACAGACCATCAGTGAGCTGGAGTCCCAGGTACACACACTGAGGGAGGAGCTGCTTGCAGCTCACAGTCAGAGAAAGCAGCAGCTGTCTGAGTTGGGCCTACTGCGTGAGGAGGAGCGCCAACGTGCTGCCCAGGAACAGGAGGTGGCATTAGGCCGTGTCCGGGCCGAAATGGAGCGTGTCCGCCAGGATCTGGAGAGGAGccacactgcagagagagaactCGCTCAGGAGAAGGCAAACAGCAGGTTGAAGCAGCTTGAGAAGGAATACACCCAGAAGCTTGCTAAGTCTGCGCAGACAATGGCCGAGCTACAAACAACACTGTTCTCCATTAAAGAAGAGagcaaacaaacacagcaggctTTGGAGTGCCAGCTACAGGAAGCACATACACGCTGGGATGAGGAGAGAAGACAGCTCAGCCGAGATGCTGACCGTGTCGGCAaaGCTCTCCAGGAGCGGGTGGAGAGCTTGCAGAAGCAGCTGCGCACTGCAGAGAAGAAACTGATGAGCCGGGAGCTGGAGACCCAGGAACAGATCACACACATACGCCAGGAGTACGAGTTAAAGATTAAAGGCCTGATGCCTGCTGAGCTCAGGCAGGAGCTGGAGGACACCATCACCTCTCTCAAGTCACAGGTCAGTTTCCTCCAGAAGAAAGCTTGCGTTTTACAGGAGGACTTGGATGCTTGCCGTAGCAGGAGgtaaTGAAGGACGTGCAATATTCAGCATTGAAGATGTCACCCCCAAACATCCTCACACACCATTCATGATTTGGACCATGACTTGCTTTCATGTTTCTGTGtcatgtttgaattttacaactttctttttaaatgtatttatggaCTGAGCCAtcatatttatttccatttttgaaAACAAATGAGTTCTGCTTAATGTGGCATGCTGTTTATTCATCACAACAAATGTTGCATGCTGTTTCTTTGGCCATGTTTACTTGATttatgaaaacaacaaaaaaaagttcccattcaaatttgtttttttattaaatacagtttTTTCTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579350.1 lncRNA upstream 4481 15203522 ~ 15204658 (+) True LOC117598819
TU250383 lncRNA upstream 198488 15010142 ~ 15010651 (+) True G211338
TU250374 lncRNA upstream 217689 14988144 ~ 14991450 (+) False LOC117598752
TU250373 lncRNA upstream 217736 14988144 ~ 14991403 (+) False LOC117598752
TU250602 lncRNA downstream 126602 15469549 ~ 15471704 (+) True G211540
TU250605 lncRNA downstream 143590 15486537 ~ 15488982 (+) True G211543
TU250935 lncRNA downstream 362802 15705749 ~ 15706001 (+) True G211838
TU250953 lncRNA downstream 496825 15839772 ~ 15840000 (+) True G211856
TU251141 lncRNA downstream 803432 16146379 ~ 16148542 (+) True G212033
XM_026916122.2 mRNA upstream 172092 15000870 ~ 15037047 (+) True cyth3b
XM_026916121.2 mRNA upstream 172092 15015834 ~ 15037047 (+) False cyth3b
XM_034309689.1 mRNA upstream 217691 14988101 ~ 14991448 (+) True LOC117598752
XM_034309966.1 mRNA upstream 230133 14974576 ~ 14979006 (+) False stk19
XM_026916236.2 mRNA downstream 310 15343257 ~ 15372183 (+) True axin2
XM_034310300.1 mRNA downstream 94444 15437391 ~ 15469406 (+) True tex2
XM_034310301.1 mRNA downstream 102708 15445655 ~ 15469406 (+) False tex2
XM_026916617.2 mRNA downstream 129919 15472866 ~ 15501425 (+) True LOC113528209
XM_026916402.2 mRNA downstream 166980 15509927 ~ 15520567 (+) True samd9l
XR_004579399.1 other upstream 1716289 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 3020550 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 3631316 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 3671974 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4791258 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 470295 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 575270 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 797383 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 1744344 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 2841072 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile