RNA id: XM_026916237.2


Basic Information

Item Value
RNA id XM_026916237.2
length 2033
RNA type mRNA
GC content 0.52
exon number 14
gene id wipi1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3694729 ~ 3714082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCGCCTACCATGATGTGACGCTAACTGCCGTGACGCAAGAGCCAtcagctgtttttgttttgctcctGTTTGGGTCATTACGGATCTTCGGCAGTGTGAGGCGGCTCCAGCGGATCCGGGGGCTCCGGTGAAGGCGGGGCCGGGCGGAGGTCGCCGGAGTTCGGCATGGAGAGCGGAGATGGAGGCGGAGGAGCCCGCGGCCCGGCACTGCGCTGCGCCTCCTTCAACCAGGACTCCACgTCGCTGGCTGTGGGTACTAAGGAAGGTTACAGACTGTTCTCCGTCACCGCCGTGGATAAACTGGAGTGTATTCATGAAAGCACAGAGAATCCGGACGTCTACATCGTGGAACGTTTGTTCTCCAGCagcctggtggtggtggtgagcCACTCGATGCCACGACGCATGAACGTCTATCATTTCAAGAAAGGAACGGAAATCTGCAACTACAGCTACTCCAACTCCATCCTCGCCGTGCGCCTCAACCGACAGAGGCTGGTGGTTTGTCTGGAAGAGTCCATTTACATCCACAACATAAAGGACATGAAGCTTCTGAAGACTCTTCTGAACACACCCCCCAACCCCTCAGGTCTCTGTGCTCTCTCCATCAACCATTCCAACTCTTACCTGGCATATCCCGGCAGCGCCACCATCGGAGAAATCATCGTCTACGACGCCAACAATCTGagcacagtgACCGTGATTCCTGCCCACGACAGTCAATTAGCCGCCATCACCTTCAACGCCTCAGGCACCAAACTGGCCAGCGCCTCAGAGAGgGGCACAGTGATCCGAGTGTTCTCCATTCCAGAGGGACAGAGACTGTTTGAGTTCCGCAGAGGAATGAAAAGatACGTGAACATCAGCTCCCTGTCCTTCAGTCCTGATGCTCAGTTCCTGTGTGCCTCGAGCAATACTGAGACAGTTCACATCTTCAAACTAGAGCAGCATGGACACAGcgggGAGGAGGAGAACCCCTCGTGGTCAGCGTACGTGGGGAAGATGTTTTCGGCGGCGAGCAGCTACCTGCCCGCACAGGTTTCAGGAATGATGAGTCAGGATCGAGCGTTCGCCACGGTCCGCCTCAACACACACGgccacaaacacacctgcacTTTAACAATAATCCAGAAGCTTCCGCGGCTCCTCGTAGCCTCATCTGAAGGGCAGctctttatttataacattgaCCCCCAGGACGGGGGCGAGTGCAcgctggtacacacacacagGCTGTTAGGATCGGAAGAGGAGGCTGAGGTGTCTGAGGGATCGGCGGCTCCTTCCTACGCTGCGACCGCGGCCATTGGCACCTGTGGACCCGTCTCTGCCACACTaactgGATATTCCGAGGACGGAGGAGTGATGAAAGGCGAGGTGATTCCCGAGCACGAGTTCGCCGCCGGTCCCGTGTGTCTGGACGACGAGACCGAGTTCCCTCCAATAAATCGGTGTCTTGGCGGATCCCGTCGTGGCAGAACCGGCCGTCCGTGAGAGCCTTCAAGCCGGAGCGGAACGACCCTCAGTACACGAGCCGGGACTAATTAACGCGTTTCAGGAATAATTAACCCAGTTCCGGACTAATCCAACTCATTTCAGGGTGCTAACCTCACGAGCAGAAAAAGCATCAGGAGGGCGTGGTCGTTGTTGCTCGCTCTCCTGAAGGGTGTGTTATATGCATGAACAAACCGTAACCACGGACACGACACACATTTCTTGAAGATGTAAAACTGTAGCAtcgtattatattatattatattataatgataTTGTTTTATTCGTTTATGTTTAACATCGTCATATTTACAGAtggaatttgtttttttgttgtttttaacgTATTTGCTGTATTAATACCTAATCCATGTTTACACGTCATCATCCTGAACACTAATACAACAGGATGTGCTTTTAAATGTACGTGCctatgattttatttgtatttcgCAGAATTGCTGgaagaccaaaaaaaataaataaataaaaattaaaaagaaactgTAGAAAATAGGAATAAAATTATGCAAAGCA

Function

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0034045 phagophore assembly site membrane cellular_component
GO:0050681 androgen receptor binding molecular_function
GO:0030331 estrogen receptor binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242524 lncRNA upstream 33565 3633171 ~ 3661164 (+) False glyr1
TU242531 lncRNA upstream 45191 3648189 ~ 3649538 (+) True G204774
TU242550 lncRNA upstream 48054 3645763 ~ 3646675 (+) True G204790
TU242528 lncRNA upstream 104698 3587902 ~ 3590031 (+) True G204771
TU242522 lncRNA upstream 107181 3534289 ~ 3587548 (+) False glyr1
TU242579 lncRNA downstream 62522 3776604 ~ 3786578 (+) True G204815
TU242596 lncRNA downstream 139414 3853496 ~ 3882959 (+) True G204832
XR_003402906.2 lncRNA downstream 141972 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA downstream 141972 3856054 ~ 3866338 (+) False LOC113528035
TU242626 lncRNA downstream 150831 3864913 ~ 3869743 (+) True G204860
XM_026916239.2 mRNA upstream 2362 3685478 ~ 3692367 (+) True zgc:86896
XM_034309671.1 mRNA upstream 54858 3630439 ~ 3639871 (+) True dus1l
XM_026916172.2 mRNA upstream 54858 3630440 ~ 3639871 (+) False dus1l
XM_034309672.1 mRNA upstream 54858 3630849 ~ 3639871 (+) False dus1l
XM_034309981.1 mRNA upstream 107033 3563650 ~ 3587696 (+) False glyr1
XM_026916693.2 mRNA downstream 9681 3723763 ~ 3733885 (+) True slc16a6b
XM_026916694.2 mRNA downstream 9681 3723763 ~ 3733885 (+) False slc16a6b
XM_026917083.2 mRNA downstream 23378 3737460 ~ 3742455 (+) True LOC113528497
XM_026916074.2 mRNA downstream 33419 3747501 ~ 3756184 (+) True LOC113527907
XM_034310038.1 mRNA downstream 196123 3910205 ~ 3916855 (+) True rnf113a
TU242330 other upstream 494596 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 681870 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1538880 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1809251 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2103654 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 252676 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 252676 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 252676 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 252676 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 257097 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile