RNA id: XM_026916239.2


Basic Information

Item Value
RNA id XM_026916239.2
length 1535
RNA type mRNA
GC content 0.49
exon number 10
gene id zgc:86896
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3685478 ~ 3692367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccagAGCCTCAGTGTTCGGCTGCATTCGTGTCGACTGCCCAGAGTCCACGGAGCCTCACGCCTGACCTCAGGACTGAATATACCGACTCAGAGAAAGAGCTCCTCTGTTACAACATGTCTGTGTACAGCTTTGGGTTGGAGCCTCTGTCCTGTCACGCCTGGAATAAAGACCGAACTCAGATCGCCATCAGCCCCAACAGCAGTGTGGTGAACATTTACCAGAAGAAGGGGAAGGAATGGAGCAAAATCCATGAGCTGAAGGAGCACAGCGGGCGAATCACGgGAATCGACTGGGCCCCAGAGTCGAACCGTATCGTGACGTGTGCCTCAGACAGAAACGCCTACGTGTGGACTCTGAAGGACGGCGTGTGGAAGCCAACTCTCGTCCTCGTTCGCATCAACAGAGCCGCCACGTGTGTCAAGTGGTCACCTCTGGAGAACAAGTTTGCTCTTGGAAGTGGAGCTAAACTCATCTCAGTGTGTTACTTTGAGAAAGAGAACGATTgGTGGCTCAGTAAGCACATAAAGAAAGGGATCTGCTCGACCGTGCTCAGTCTGGACTGGCATCCCAATAACATCCTGCTGGCAGCCGGGTCATCCGATCTCCACTGCAGGGTTTTCTCCACGTATATCAAGGAAATTGAGGACAAGCCTGGTCCGACACCATGGGGAGTCAAGATGCCGTTTGGTGAAATGCTTCTGGAGAATAAAGACTGTGGTGGATGGGTGCACAGCGTCGCCTTCTCTCCGTCTGGAGACACGCTGGCCTGGGTCAGCCACAACAGCTCCATCAGCGTCGCCGATGCCACGCAGGGCAAAGAGGTTACACAGCTGACTACAGAACATCTTCCTCTGCTCAGTGTGCTGTACATCAGCGAGACAGAGATTGTGGCCGCGGGCCATGACTGCTGTCCCTACCACTTCTCCTACAAGGGGCCCGGCAAGCTGGAATTTGTGCGAAAGCTCGGACTCGCCAAGCAGACGTCAAAAAACAGCATGTCGGCCATGCAGCACTTCCGCAACCTGGACAAAAAGGCCACGACCGACGAGGAGGATAACGAGCTGAGCACTCTACACCAGAACAGCATCACCCAGCTGTGTGTGGTGGAGGGAGACAGGGCCAAAGTGGAAAAGTTCAGTAGTGTCAGTCTGGATGGAGCCATGGTGCTCTGGGAATTCAAGcCTTGAAACTCACTAATAAGGCAGAAAGGTTTTGCGGCCGATCCGACATCCACGCCACACCACGTCACACCACTCCAAAGACCTCAGTGTCATTCTGCTGCTGTGCTTAGAAATATCATTTAAGATCaacactttattttctttagcttttacaaaataaacatgttatactgtaattttaatttctgtaaTTACTCAGACAAAAGGTATTACTCTAGAGTAACTATTACAGGGACACAGACTTTAGTTTCCAAgttttcaaatgattttttaaaaatatattttggttttaggatttttttttttaagaaagtttTCCTGTCATAGCaaataaaaattttcatttgtaaaaa

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242524 lncRNA upstream 24314 3633171 ~ 3661164 (+) False glyr1
TU242531 lncRNA upstream 35940 3648189 ~ 3649538 (+) True G204774
TU242550 lncRNA upstream 38803 3645763 ~ 3646675 (+) True G204790
TU242528 lncRNA upstream 95447 3587902 ~ 3590031 (+) True G204771
TU242522 lncRNA upstream 97930 3534289 ~ 3587548 (+) False glyr1
TU242579 lncRNA downstream 84237 3776604 ~ 3786578 (+) True G204815
TU242596 lncRNA downstream 161129 3853496 ~ 3882959 (+) True G204832
XR_003402906.2 lncRNA downstream 163687 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA downstream 163687 3856054 ~ 3866338 (+) False LOC113528035
TU242626 lncRNA downstream 172546 3864913 ~ 3869743 (+) True G204860
XM_034309671.1 mRNA upstream 45607 3630439 ~ 3639871 (+) True dus1l
XM_026916172.2 mRNA upstream 45607 3630440 ~ 3639871 (+) False dus1l
XM_034309672.1 mRNA upstream 45607 3630849 ~ 3639871 (+) False dus1l
XM_034309979.1 mRNA upstream 97782 3563650 ~ 3587696 (+) True glyr1
XM_034309980.1 mRNA upstream 97782 3563650 ~ 3587696 (+) False glyr1
XM_026916237.2 mRNA downstream 2362 3694729 ~ 3714082 (+) True wipi1
XM_034309825.1 mRNA downstream 2362 3694729 ~ 3714082 (+) False wipi1
XM_026916693.2 mRNA downstream 31396 3723763 ~ 3733885 (+) True slc16a6b
XM_026916694.2 mRNA downstream 31396 3723763 ~ 3733885 (+) False slc16a6b
XM_026917083.2 mRNA downstream 45093 3737460 ~ 3742455 (+) True LOC113528497
TU242330 other upstream 485345 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 672619 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1529629 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1800000 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2094403 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 274391 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 274391 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 274391 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 274391 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 278812 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile