RNA id: XM_034309859.1


Basic Information

Item Value
RNA id XM_034309859.1
length 4361
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC113528020
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21147066 ~ 21155800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctatctttAGGGATATTccttaatgttagctagctatcttcACGGATATTCCCTAATATTAACTAGCTATCATCagggattcattcattcattcccaAAGGGATATTGCTTAATGTTAAATAGCTATTTTCATGGATATCCACGGATATAGACGTTACTAAATGAAGGTAATGCAATTACGTATTAATAAGTATCTAAtcatctatatatacatatatacatgtatgaAGTGTAAAGCTAAcagtgtatctctgtgtgtgtcttggaCATGGAGTAGTTGAATTTGTGTTCAGGGAAGTGTGTGTAAGCAGTGGCAGATGGTTCACTGAACACAtgctgagtctgtgtgtgtgtgtgtgtgtgtgtgtgttcctaaaCAGTGAAGTGatgggaggaaaccagagaaccctgagaaGCCTCAcgcagacatggggagaacatgcatagTATggccacacagacagtaacctgaccTGCGAGGAGGCGAAGCTACCCGCTGTGCCACTCTGCTGCCCCTCTCTggatgcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaatgccaaaatcaccaaactgtacTGCACCCTAGCAAGGAACCATTAGTGAAGTAGTGCCATACTACCTGCATAAAtacattaagtaaaaaaaaataatggcaccctACATAGGGCACTCTATGTCTGACAGGGAGCAACAGATGTATTGCACTGAATCCCaaaaatgttgtaaaataaaatagatggacaaatgaatgaatgcaaaaaTGAACGGATAGATAGAAGGTTGACAGCTGGATAAATAAATGGACATCAGGTTAGTACGAATGCAGATATAAAAAGAACTGGTGACACACCAGCCTCTTATCTCCGCCTCCATCACTGCGTTGTCTTCGCAGACCGTCTGCTGGTGATTGACAGCTGAATGGCGGCGCGGCTGGAGCGCAGACGCATCTGGTTTCTGTGTGATGTGATATCCTCTTGCGTCTAAGCACTAGCGACTGGTGAGGTCTCTTTCTGGCAATCAAAACACTGGGCTGCAACTCAAACCTGCTATAACGTCCCAGAGAAGTGCACTATGTAGGCTAGGTTTTGAAATAGTAATagtaaccataattttaattgAATCACAAAAgtacaatatactatatatactgtatctagCAGTGAGTCATTTGTGACTTCCTAcagaaatgcattaaataagCTATTAAATAACACTatgtatagtgcactatgtataTAGTAGAAAGGTATTTATAAGTGCACTGCACAGGGTATGAAATAATGGCTACaaccatgtagtgcactatgtgtcCAACTGGGAGCCAATTGAGATTCAACTCCTGTACCTATGTAACCTACTATATTAGGAAAGTTCTTAATCCATTTTCAGTTCTGGGCCATGTCAGTGATTAGCTTGTATTAGGCTACCTATTTCTTTTGCGTGTGTGGAGCCAGAACAGAATGAACATGTGGCCTAGACGTAGCACCTGAATGGTAAGGagtcatttgggacacagccattACATCACAACAGAGTAAAAGGAAACCACCTGGTGCACTGTTTCATTATCTGAGTGGCAGTATGCTGGCTTGTGTACAGCGCTGGTTTGATCCATTTCTTCCCTACATATGCTTCCATGAGCTGGATCATGAGCTTCACAGTTGCGGCTGtgtgctttgtgacactgtTGTTGGAGGTGGCTCATGCGGCCCAAGGCCACTTTGCGCATCAACTGTTAAATGACCTTATGGAGAATTATTCGAACGCTCTGCGGCCCGTGGAAGACACAGATAAAACACTCAACGTCACACTGCAGGTCACACTGTCTCAGATTAAAGACATGGACGAGCGTAACCAAGTTCTTATAGCATACCTGTGGATAAGGCAGACGTGGTATGATGCCTATCTGAAGTGGGATAAAGACGAGTACGATGGCCTCGAGGTCATCCGCATCCCCAGCAGCCTGGTGTGGAGACCCGACATAGTGCTTTACAACaaagctgatGAAGATTTGCCCGGCCCAGCGGACACTAATGTTGTGTTGCGTTACACCGGTGAGATCACTTGGGATGCTCCAGCCATCACCAAAAGCTCATGTGTTGTGGATGTGTCCTACTTCCCTTTCGACAGCCAGCAGTGTAATCTCACCTTTGGCTCTTGGACCTACAACGGCAATCAGGTGGACATCACCATGGGGATGGCTAGCGGTGACCTCTCAGACCTGGTGGAGAATGTGGAGTGGGAGTGTGACGGCATGCCCGCCACCAAGAATGTGATCATGTATGGCTGCTGCTCGGACCCATACCCGGATATCAcgtacacactgctgctgcgCAGACGCTCCTCCTTCTACATCTTCAACCTGCTCCTGCCCTGCTTCCTCATCTCCTTCCTGGCGCCACTTGGCTTCTTCCTGCCCGCGGACTCAGGTGAGAAGGTCTCGCTGGGTGTCACCGTGCTGTTGGCGCTCACCGTCTTCCAGCTGGTGGTGGCCGAGAGCATGCCGCCTTCCGAGAGCGTGCCGCTCATAGGTAAATACTACATTGCGACGATGACGATGATCACGGCCTCCACCTCtctcaccatcttcatcatgaACATCCACTTCTGTGGTGCTGAAGCCAAACCAGTCCCTCACTGGGCCAAAGTGCTTATCATTGGCTACATGAGCAGGATCTTCTTCGTCTACGAAGTTGGAGAGAGCTGCACCTCATCATTAGCATGGAACAAAGATGCAGACAAATGCCATGCACAGAAACATCAAAAGAAACCAACCAGGCAGAACCCAGAACCAACCAGGAACCCTTCAGGTCTCCCTTGCTGTCCTGATGATGAAAAACTACCTTCCCCAaatgtgacctttgacccctgcATGTTTTGTGGCCCACATAGTGGTGGAGACCCGAAGCTCATCAAGAACGTTGAGTACATTGCGAACTGCTTCCGGGAGCAGAAGTTGACTTCCCTGAAAGTGGCtgagtggaagaaggtggccaaGGTGATGGACAGGTTCTTCATGTGGATCTTCTTTGCCATGGTCTTCCTCATGAGCATCCTCATCATCGGCAAGTCATCGTGACCACATAGAGCTACGTTTACCCAGAATAATGCTTGCTTGATTGTATGTACATGtaaacaaatacatacagaCCTGACTATAAGCAGTGTGTCAGATAGCGAGTCTGAAACCGGATGCCATGTGTGTTCTCCTGTTCCTCTCTCATTCCTGTGGTAATTATTTGTGCACTGAAATCAAAATACTGCATTGCTAATGATAGGCCAGTTGCGCTGTGAGAAACTCTTTGAATGAGAGGTCTAGAAAAGAATGATGGTGCATTCCAGAACACTACAGTGTACATGATTGGTGATGCCTAGGAATGAAGATGAAGCTAAAAGTATTGGATCCTGATGACTGGCTGAGAATTTCACTTTGGCTCCAGAATTCTAGAGCCAACATGGCTGCTGTCTGAAATACAGAATATATAACTGATGATTCTGGAACTCCACAatacacatgattggctgagagttcCAAAATAGAATCTGCATGATTGGTTCAATGTTCCCGAATAGATTGTGCACAAATGGCTGAGTGACCAACAGTAGAATGCACTTGATTGGCTAGGAGTTCAAGATCTCCAGAATGgacatgattggctgagagttcTCAAATagaatgtgtgtgattggttgAGATTTCCATAGAACAATACACATGACTGGTTAAGTGTTCCAGAACTGAATACAGTTCCAGAATAGCTTGTGAATGATTGGCTAAAGGTTCTGGAACTGTAGCATGGACATGTAGCATGTTGAGAAGTCTAAAATACAGTGTGCATGACTGGCTGAGAGTTCTAGAATAAAATGCACATCACTGGCTCTAATTTCAAACTGATGATTGGCTCAAATGCTGGATTGCAATGGAATGGCTGAGGGTTCCAGAATAGCTTGTGCACTAATGCCTGAGAGTTCCAGGATAGAATGCACATGATCGGCTGAGAATTCCAGAATAGAATGCACATGATCAGCTGAGAATTCCAGGATAGAATGCATATGATCGCTGAGAGTTCCAGGATAGAATGCACATGATCGGCTGAGAATTCCAGGATAGAATGCATATGATCGGCTGAGAGTTCCAGAATAGAATGCACATGATCAGGTGAGAGTTCCAGAATAGAATGCACATGATCAGGTGAGAGTTCCAAATAGAATGCACATGATCAGCTGAGAATTCCAGGATAGAATGCACATGATCGGCTGAGAATTCCAGGATAGAATGCACATGATCGGCGGAGAATTCCAGGATAGAATGTGCATGATCGGCTGAGAATTCCAGGATAGAATGCACAT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254118 lncRNA downstream 243025 20900085 ~ 20904041 (-) False spry1
TU254119 lncRNA downstream 243229 20903098 ~ 20903837 (-) True G214626
TU254012 lncRNA downstream 305432 20841431 ~ 20841634 (-) True G214526
TU253976 lncRNA downstream 365364 20778765 ~ 20781702 (-) True G214493
TU253795 lncRNA downstream 701318 20445523 ~ 20445748 (-) True G214331
TU254389 lncRNA upstream 81009 21236808 ~ 21257851 (-) False slc16a2
TU254391 lncRNA upstream 81059 21236858 ~ 21244785 (-) False slc16a2
TU254446 lncRNA upstream 171861 21327660 ~ 21329675 (-) True G214917
TU254466 lncRNA upstream 198207 21354006 ~ 21356874 (-) False LOC113528016
TU254470 lncRNA upstream 203898 21359697 ~ 21359899 (-) True G214933
XM_026916763.2 mRNA downstream 3203 21082019 ~ 21143863 (-) True LOC113528290
XM_034309854.1 mRNA downstream 4302 21082019 ~ 21142764 (-) False LOC113528290
XM_034309855.1 mRNA downstream 5048 21082019 ~ 21142018 (-) False LOC113528290
XM_026917307.2 mRNA downstream 118985 21015122 ~ 21028081 (-) False fgf2
XM_026917306.2 mRNA downstream 118985 21015122 ~ 21028081 (-) False fgf2
XM_034309861.1 mRNA upstream 1681 21157480 ~ 21163061 (-) False ube2ka
XM_026916178.2 mRNA upstream 1681 21157480 ~ 21162875 (-) True ube2ka
XM_026917194.2 mRNA upstream 10052 21165851 ~ 21174532 (-) True klb
XM_026916809.2 mRNA upstream 29163 21184962 ~ 21201869 (-) True ints10
XM_026916810.2 mRNA upstream 29163 21184962 ~ 21201742 (-) False ints10
TU254170 other downstream 119807 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 734136 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1083576 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 1698732 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2070726 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 516363 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 517023 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 519839 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 520472 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 528225 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile