RNA id: XM_026916268.2


Basic Information

Item Value
RNA id XM_026916268.2
length 3225
RNA type mRNA
GC content 0.45
exon number 18
gene id trap1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17319742 ~ 17342075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTAAGCGCCACGAGAAGGTCCTTCTTTCACGTCGCTTGTCCAACACGCCGCTTCTTGGAGTAATAGGTCAAATCGCAACACAGGAGAGATGTCCCGGTGTTTGACACTACTCAGGTTTGGTCTGCACAGTTGTGGAAAGGCTAGCCTTTTCTCGTGCAGCCGAAGCCGGAGTGTCACAGCAGCATTCAGCGGAGTCAATACAAGAACAAGGACGAAACAGTATAGCACTAAACCTAGACTCTGGAGCCCAAGCCATTTTGGTGTGAAGTTAACCTGCCGTTCCTATAGCACTCAAACAGAAACTGCTGAAGAGGAGATTCTCCACAGCATTATTAGTGACACAGAGAATGTTCAAGgatcCTACTCCAAGCATGAGTTCCAGGCAGAAACAAAGAAGTTGCTGGACATTGTGGCCAGATCTTTGTACTCAGAGAAAGAGGTGTTCATAAGGGAGCTCATCTCGAATGGTAGTGATGCGCTAGAGAAGTTGCGACATAAGCTTATTACAGCAGGAGGAGATTCTGAACCTCTGGAAATCCATCTTCAGACTGATGCAGCTAGAGGCATTCTAACTATTCAGgACACTGGGATTGGGATGAGTCAAGGGGAACTGATTACCAACCTTGGCACCATTGCTTGCTCTGGCTCCAAGGCCTTTCTGGAGGCTCTTCAGAGCCAAGCCGAGGCCAAAAGCTCCATCATCGGGCAATTTGGTGTCGGCTTTTACTCTGCCTTTATGGTGGCGGACAAAGTAGACGTTTACTCTCAGAGTGCAGAGCCTGGTGTTCCCGGATACAAGTGGTCCTCAGACGGCTCAGGAGTGTTCCAGATTGCTGAGGCCAGTGGGGTGAGACAGGGCACTAAAATTGTCTTGCACCTGAAGAATGAATGCAAGGAGTTTTCTTCTGAGGACTGTGTTAAAGAGGTTGTGAAGAAGTACAGCAACTTTGTCAGTTTCCCCATTTACCTGAATGGCCGACGACTGAACACACTGCAGGCTCTCTGGATGATGGACCCCAAAGAGATCAGTGAGTGGCAGCATGAGGAGTTTTATCGCTATGTAGCTAAGGCGTATGATAAACCtcgctacacactgcactaccgTGCTGATGCTCCCCTCAACATACGCAGCATTTTCTATGTTCCTGAGATGAAGCCAACCATGTTTGACGTGAGCAGGGAGATGGGCTCCAGAGTGGCTCTGTACAGCCGGAAAGTCCTGATCCAGACCAAGGCTACAGACATTTTGCCCAAGTGGCTGCGCTTCTTGCAAGGAGTGGTGGACAGTGAGGACATCCCCTTGAATCTCAGCAGAGAGTTACTACAGGAGAGTGCTCTCATCAGGAAATTGCGGGATGTGCTGCAGCAGCGAATCATTCGTTTCCTGTTGGACCAGAGCAAGAAAGAGCCGGAGAAATATGCTCACTTCTTTGAGGACTATGGGCTTTTTATGAGAGAAGGCATTGTCACCAGCACTGAGCAGGGTATTAAGGAGGACATAGCCAAGCTGCTCCGCTTTGAGTCCTCAGCATTGCCTGCTGGGCAGCAAACCAGCCTCATGGACTATGCCTCGCGCATGAAGGCAGGCACCAGGAACATCTACTACTTGTGTGCTCCCAGTCGCCATCTGGCTGAACACTCTCCGTACTATGAGGCCATGAAAATGAAGGACATGGAGGTGCTCTTCTGTTATGAGCAGTTTGATGAGCTAACCCTGCTCCACCTCCGAGAGTTCGACAAGAAGCAGCTGATCTCTGTCGAAACCGACATTGTAGTTGACCACTACAAGGAAGAAAAGTTTGAAGCCAACAAGCCAGCATCAGAACAATTAAGTGAGCAGCATGCTGAGGATCTAATGGCCTGGATGAGGAACTGTCTTGGTCAGAAAGTCACAAATGTCAAGGTGACTCCTCGTCTGAACACTCACCCTGCCATGATCACAGTGCTGGAGATGGGAGCAGTGCGACATTTCCTTCGCACTCAGCAGCTGGCACGTAGTGTGGAGGAGAGGGCACAGATCCTGCAGCCCACACTGGAGATCAACGCTGGGCATGACCTCATCAAGAAGCTTCATGTGCTGAAAGACTCTAATCCAGATCTTGCCCAGCTGCTTCTTGAGCAGATTTTTGACAATGCTATGATCACAGCTGGTCTGAATGATGACCCTCGGCCAATGATCTCTCGCTTAAATGATCTGCTGACCAAAGCCCTGGAGAAACACTGAGACCAGGACTGGAGATTGGAGAGACCTGTCCTGAGGAATACTTTGTTTTGCATCATCACAACACTATAAATGTATTGAATTTTCTATCATAGTTTGTCCTACACTTTGCTATGCTAAATCCCCATAAATGTCACCGGTCTTTGTTCAGATTAACAGCTACTCATCTAAGAgtagtgttatttttttcatggcTCAGAGTCAGATGTTTGTTATGGAAGAATGTTCAGTGTAGTTCGGTGTAATATTGATGTGTGTAGTATTAAAGGACAAAGATGATGAGAGGACTCTTACTGCACATATCCACTTGCAAATTTTGTTGCCAAAGCACTTTTTCTTCCAGCTTATGGGCATTTCTATGCCATTTCTTTTGCTTGCCTCCATGCACCAGGCACATTGATTTGTATAATGTTTGGCTCTGCTGAACTTTTGCTGCCGCACAGTAAAACAGATTTTGCAAGTCATGCAAAACGTGGATTCAGCAGAACTGTCCACTGAAATGAATGCATAGTGGTTGCTTGTGGGAACACAGTATTTAAACCTGCAACATCAGATTCTGTTGAACTCTTGCCtttattattgatattgttCTTTTGTCCTTACTTGTTTATTCATCAGCAGAATTGTAATAGccattgtttttatgtttaaagttCAAATCTCAGTTGCTTATGATACTCGCAAGACATTTGTGACTGTTTAGAAGACGAAGAAGCAGTAAAACCTGGAgttccaaaacacacaaaaatataggGAAGGAATGGATTCACCATAAGCAATTGTATGAATGggatgaaaaaaattgaaaaatctaTTTACAAAAAAGTAAACTAAGGACAAATAGTTATTATATACAATAACACTGCAGGGGcaagctcatttaaaaaaactgttggTATTATTTTAACTGATAATGTTCTTTTGGAATGATCACATTTTGTGCAATTGTTCCACATTTGCATATTTCcaaataaattgaatattaattgtgtttctataaa

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09488 TRAP1, HSP75; TNF receptor-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251790 lncRNA upstream 22868 17296408 ~ 17296874 (+) True G212589
XR_004579348.1 lncRNA upstream 33900 17276654 ~ 17285842 (+) True LOC117598773
TU251783 lncRNA upstream 35256 17284283 ~ 17284486 (+) True G212582
TU251769 lncRNA upstream 139489 17179794 ~ 17180253 (+) True G212571
TU251750 lncRNA upstream 206586 17110236 ~ 17113156 (+) False srl
TU251893 lncRNA downstream 42889 17384964 ~ 17385177 (+) True G212662
TU251986 lncRNA downstream 319880 17661955 ~ 17662194 (+) True G212728
TU251987 lncRNA downstream 321660 17663735 ~ 17663960 (+) True G212729
TU251980 lncRNA downstream 350016 17692091 ~ 17694083 (+) True G212722
TU251978 lncRNA downstream 356604 17698679 ~ 17730297 (+) False cenpx
XM_026917225.2 mRNA upstream 206972 17087284 ~ 17112770 (+) True srl
XM_026917226.2 mRNA upstream 206972 17087285 ~ 17112770 (+) False srl
XM_026917074.2 mRNA upstream 233987 17067237 ~ 17085755 (+) True tfap4
XM_034309796.1 mRNA upstream 321048 16997366 ~ 16998694 (+) True LOC117595691
XM_034310192.1 mRNA upstream 322090 16995855 ~ 16997652 (+) True LOC113528633
XM_026916309.2 mRNA downstream 356598 17698673 ~ 17733006 (+) False cenpx
XM_026916308.2 mRNA downstream 356598 17698673 ~ 17730565 (+) True cenpx
XM_026916307.2 mRNA downstream 356598 17698673 ~ 17722261 (+) False cenpx
XM_026916310.2 mRNA downstream 356598 17698673 ~ 17702742 (+) False cenpx
XM_026916729.2 mRNA downstream 407099 17749174 ~ 17767669 (+) True ccdc137
TU251743 other upstream 210467 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 1174358 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1350983 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 1506411 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3826892 13475828 ~ 13492850 (+) False zgc:158403
XR_004579361.1 other downstream 841944 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1572651 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1572651 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 1801999 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 1959280 19301355 ~ 19313218 (+) True gng13b

Expression Profile