RNA id: XM_026916269.2


Basic Information

Item Value
RNA id XM_026916269.2
length 2729
RNA type mRNA
GC content 0.44
exon number 14
gene id baiap2l1b
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10485735 ~ 10527286 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTGACGTCACGCGCTCTACCTAGCCTTACCTATGCTGACTCCGCCCCCTTCTCCTCACTCACACATGCGCGAGTTTGACAGCGCAGCTTTGAAACTGAATCGAAAACGCCCGGTTGTTCCTCCTTGTTCGTCGTTTTGGggattttttcctctttctttctgtagttTTAAGTGTGGTGTGTGGGGAAAATCGACTAGCTATGAGGACCGGTCTCTAacggagggttttttttttggtcgttGTTTCATTACTTGGGAGTATCGACAGGTTAGaaagtttttgtatttttgttacacGCGCGAACTCGCGAAGGACTGAAACATGTCGCGAGACCCAGACGAGGTgaataaactgactgaaagCACCTATAAGAATGTTATGGAACAGTTTAACCCGGGGCTGAAGAACCTTATCAACCTTGGAAAGAGCTACGAGAAAGCCGTCATGGCCATGACCCTGGCTGGAAAGATGTACTTTGAAGCTGTGGGTAAGATCGGGGAGAACGCTGCTGTATCTCCGGTCTCAAGAGAATTAGGAGTGGTGTTGACTGAGATCTCCGAAGCCCACAGGAAGGTCCTACTTGAGCTGGAAGAGAATTTCAGACGCTTCCATCGAGAGATTATTGCTGAGCTGGACAGGAAGACAGATATGGATGTGAAATACATGACGGCCACGTTTAAGAAGTATCAGATGGAGCACAAGATGAAGCAGGACTCTCTGGAGAGGTCTCAGGCTGACCTGAAAAAGCTGAGGAGGAAGAGCCAAGGAAAGAATGCGCTGAAGTATGAGAGCAAAGAGAATGAGTGTTTGGAGACCCTCACGCACCGCCAGATGGACATGCAGAAGTTTATTGCAGATGGCTGTAAAGAGGCTTTGCTTGAGGAGAAAAGGAGGTTCTGCTTCCTGGTGGACAAACATTGTACTTTCTCCTACCAGTTAGCAGCTTTCCATGAAAAGGCAAAGGATATTCTAACAGACCAGATACCTAACTGGCAAGATAAATGTACTGATATTACCAACGTTCCAGACAGTGTGATGTCAATGATAGAAGGTCTGCGCACCCCAGTGTCTATAACCCCTCAGGCCTCTCCAGCCGTAAAGCGCCACAGCAGGAACAATTCTGATGCAGTGATTCCACCTCCTGCACCCCCACTAAAGGCTCAAACAAGTCCATTAGCGAACATGTTCAACCAAGACACAGCAAAGCAAGAGACTGTGACTGATAATAGTAATGATGGGAGTCAAATGGTCAGGTCAATTTCGATGGCTACAGGGCTGAACAATATGAGCCGGAGGCCACGCGTCAGGACTATCTTCCCCCACAACTCTGGCAATAACAACACCCTGCTGAGCTTTGATGAGGGTGACTTCATCATCCTGCTCATCCCTGATGAGAAAGACGGCTGGCTTTATGGAGAATTGGAGAAGACCAAACAAAGGGGCTGGTTTCCATCATCCTACTGTCGTCCATATGTAGAACCTGTGGTAAATAACAGTGTTGTTGGGAATCCTCCGGCACGTAGTAAGAGTGTGGCCAACCTCACGCAGCAGGACCCCGAGGATGATATGCTGCTGCCTCCTCCTGACTACAGCGACATTGCCGTCAGGAGGAACTCAACCAAGTCCCTGATTCAGACACATGTGCCTTCCTCTGAAAACACGGTTTCTCAGCCAAATGGAATTTCAAAGCCGCCTTTTCTAGGGGGCGGGAACCCTTTTGCCACCGTGAAGCTGAGGCCCACAGTCACCAACGACAGATCGGCTCCTAGGATCTGATTATCACCACCCCTTAGCCATCAGCAGCTCTTTTCCCCCCAGCATCACCACCACTGCTGCGTGAATGCAGACCTTTCTTCTGCAAAGTACTACATTATACATGAGCTTTAGGCCATGTTGGACTAGATACCTTGGTGGCCTCATTGCACACAGGCAAACTACACATTTATCTTTGTACATTATAAAAGCcaatattcacatacacatttaaaaatcattcagatGTTTGTGCTGCCGTATAGGGTTTGTCCTGGACGATGAACAAGAGCGGCGCTAGATAGATCTGTTATAGAGTAAATATgcttataatatattttgtcCGGAGTTTTACCTGAGGCGTTGATGACTGCTTTTAATTTGCAAGAATAACACGCCTTCCCTGTGCTGAGATGGAGAGGAACCTAGgatgtttaattaattgttaaGAATTTTACATTGTCATGGGACAATGATGAATGTAAAAATGGGACCAAGGCACTGAATTTTCAGGTTATATAGTGTTGCAGATGTAATTATGCAGGATTACTTAAATTGTATCAGGTTATTTAAAATCTCGAACGTCATGGTACACTAGGATTAAACATATGCTTTAATTCCAAATGCTTGATAGTGTGTTTAGATTGTAAAGCTATGCTTCAACAGACCCATTCCCAAATACTATTTAAtacccttttttctttttctcagagAGGATACATTTACCTCTTTAATTTTATGATGTTGTcactgaaaattatttttcaatgtCCGTATCCAGTTCACAAGCAGCCTCACTTGTCTTCGAGAGTCACACTGATTAAACACACTTTAATTACATAGACAAATTGTACTTAAATTAATTTTGAAGCTTTAAGGTAGCCATTTATTCGTTTTATCAACACAGTTGTCTCTTTTCCAATGCCCTGTGAATCActgctgtataaaataaaaatgttttatttcttttatca

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG:

id description
K20127 BAIAP2L1, IRTKS; BAI1-associated protein 2-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247554 lncRNA downstream 35195 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 143513 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 194850 10221710 ~ 10290885 (-) True G208771
TU247295 lncRNA downstream 298483 10187036 ~ 10187252 (-) True G208758
TU247174 lncRNA downstream 419379 10063977 ~ 10066356 (-) True G208649
TU247589 lncRNA upstream 106249 10633535 ~ 10634150 (-) True G208998
TU247803 lncRNA upstream 561727 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 691373 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 691382 11218668 ~ 11221366 (-) False LOC113528410
TU248181 lncRNA upstream 861674 11388960 ~ 11389231 (-) True G209529
XM_034309977.1 mRNA downstream 15219 10451272 ~ 10470516 (-) False tecpr1b
XM_034309976.1 mRNA downstream 15220 10451272 ~ 10470515 (-) False tecpr1b
XM_026916200.2 mRNA downstream 15221 10450724 ~ 10470514 (-) True tecpr1b
XM_026916206.2 mRNA downstream 58507 10420040 ~ 10427228 (-) False pvalb5
XM_034309978.1 mRNA downstream 58507 10420040 ~ 10427228 (-) True pvalb5
XM_026916885.2 mRNA upstream 19035 10546321 ~ 10557800 (-) False nptx2a
XM_034309701.1 mRNA upstream 19035 10546321 ~ 10557800 (-) True nptx2a
XM_026916281.2 mRNA upstream 320415 10847701 ~ 10869084 (-) False srebf1
XM_026916280.2 mRNA upstream 320415 10847701 ~ 10869083 (-) True srebf1
XM_026916143.2 mRNA upstream 344748 10872034 ~ 10898540 (-) False LOC113527942
XR_003402902.2 other downstream 15217 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 100615 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 754485 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1011257 9466480 ~ 9474478 (-) False copz2
TU246806 other downstream 1066151 9409804 ~ 9419584 (-) False prr15la
XR_003402978.2 other upstream 905224 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1009274 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1038724 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 1172620 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 1228539 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile