RNA id: XM_034309837.1


Basic Information

Item Value
RNA id XM_034309837.1
length 2725
RNA type mRNA
GC content 0.46
exon number 6
gene id zgc:193811
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3868579 ~ 3879880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTGCCATAGTGACCGCGGGCTATAAACTCTTCAGAAAGGCTGCTGGGGAACAGTGAGTTGTGTacCGTGTGGAGTGTAATGGACAGGCGCAGTTCTGCTAACACCAGTAGCGGTGTTGGTCATGTTTACATTCATCCTCagcctttacacacacacagctAATGCAccacttcctcctcttctccagAGACGAGTGCCTGGACCCCTGCATTACAGCGTCACCTCGTACACGGAGCACGACCCCAAACCCATGCATGGCGTATTGAGCAACGTCACCTACTCGAAAGCGTCTCCACACTGGCGCACACACTTCCTGGATGACCTGGCTCAgaagCTGCGAGACAGCCGTTCAGTCAGGCTCGTCTCTGCGCCGCCTGTCAGTGAGATGCAGGAGCAGTACAGGGGACGATCAGCACCGTACGATCCTCTGGAGCCTCACTACAGGACGCTGCAGgCACTGCATGGACAGCTCCATCAGTCTTCAGTTGTGCTGCCCAAAGAGCCGGCGCTCAGCACGGCTCACACCGACTACAGACGCTTCAGCAGGTCTGAATTGGCTCCTCTCTTAGCCTTGGATGCCTCGCCCACTCATGGACCCTTCCCCAAACTGATCCCCCTCCGCTCTTACAAGGCCCTGCCCAGTGCATCCTCTCAGCCACAGTTGCCCCGCCCATCTGTACCGGTGCCCCATGGAGGCAGAAGCAGCATGTACATGGATAGTTTCAGTGTACCCATGCCTCCACCCATGTCCTCCACCCATGTGGCTGTCCTTGCTGGGACAAAACGCACAGAGgagagtgggcggagcttactGCAGCATATCCTGGACGTGCCCGAGATGTACAGCACAGAGAACCAGACGTATGGGAAAGGGAGGATGGTGCTCGTGTGAGATAGAGCACACCGCATTCATTATTAACCAGATCTAGCCATTTTTATCCAGTTGCTTAATAATGGATGTTGGGTCGAGTTCAATTTAAATAtcattgcttttttaaaatccaaatgGGTCCTTtggtaaattttttttgttgtttatttggtAATAAGAAAGAAACACAGGATAAATGCTTGTGCTTGAGACAGAAAGTCTCTTGTGTGAGAGACTGCACGAGCCGGTCATGCTccttgtgtgtcagtgtgatatGCAAAGGATTGTGGGAAAAACTGCAATGTGTGTAAACAGCGAGAGATTGAAAGCAGGCAGGggagcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgagtgagtgtgagtgatttTGCTGAACATGCACTTGAGACAACTGAAGATGATGGGAACATAGCATAATCCGGAAGACATCAGCGCTGAACTACACAGCGCACGAGACGGAGACGGAGGAAAAACAGAGGGAATTAAAAATGGAGTTAATATAGTGGGGATATGGCAGCATCTCATGAATTAGCCTTTTGAATCCGTGTgagttttctttttccccacCCCTGCTCTACCGCTCCTTCCGCCCACCTGCTCGCCGGATCTCTGGCTCTCCTCCCCCTCTGTCTCAAGCGGCGGTGtgccagacagacagagagagagagagagagagagagagagagagaggaggaaagatTTAGAACCACATAAAGAAATGTAATGGTTGGAGACAGGAACAATGGAGGGAAATCTATTAAGAAATGAActaatcacttaaaaaaaaagtaattcaagGGTTGGTCCTAAACaggtaattaataaaaagattatTTAGACTGCATtgcatataatatacactatttaTTATATCTTTTGGGTGTGTCCAATGATACAACAATCCTGACAGGTAGCACAAACAACTGTTCAAGATGGCAGCAGTCGTTTTTGCATCTATaatcaaatcattttaaagacaaTGTAATAATAACTATATTCACGATATGGCCGTGCATCTTTTTACATCTTTCTGGTCCAGAAATGAGCTCCGCCTCTTGCGCTAGTATTTAGGAATGCACATGCAGGTGTTTTGTAGGCGTGACTTTAAAGAGAACGCTCAAGGTCAGACTGCATTTGCTTGAATTTGGAGTATACATTTAAGGACTATTTGAAATTCTGTATTTGagacaaatatttttctaaagATTGTGTTGAAAGCAGGCATTATGTGAAAATGGTCGCAGTAGTGTCCTCTATGAAGAACCCCATGTTtggaaattgaaatgaattttgtAACCTGAAAAGACTTTGTTCCAAATCGATGTTTTTGTAAATCACTGTATGGTGACGcctctcagctccagggtccccggttccATCCTGACCAGGAGTTACTGTCTGTTCTCTACTTGTAGATTCTCCGTTTTCCACCTTCTTCCCAAAAAACATCCTGGCAGGTGGActacgctaaattgcccctacgtgtcaatgtgtgtgcgcagtgtTCCATCCAGGGTATTCCTGTCTTAGTCCCAATGCTCCCGGGATTCACCACCACTCCAACCAGGTGCTTAatgaagattaataaatgaCTGTAAGAAatatacattcatattttatacataattgAAAAAGATTCCTAACTGTAACTGTcctaaattaatttcattaatggTCTTATGTTTGAACGTTACAATTAGCGTGACTCAGTTTGTGTGGAAAGTTAAACAGGGTTGGATTTCGTAGCTTTTCCTTCGTCTCCATGGGTGTGAAATTGGATGGTATGGAATTTGTATGAATTTCTTGTGAAAACAGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242898 lncRNA downstream 92129 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA downstream 92129 3768855 ~ 3776450 (-) False kcnc3a
TU242874 lncRNA downstream 129620 3704283 ~ 3738959 (-) True G205063
TU242844 lncRNA downstream 237196 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 248460 3617171 ~ 3620119 (-) True G205030
TU242970 lncRNA upstream 68969 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 68969 3948849 ~ 3957710 (-) True G205145
TU242974 lncRNA upstream 68969 3948849 ~ 3957710 (-) False G205145
XR_004579371.1 lncRNA upstream 110526 3990406 ~ 3990917 (-) True LOC117598833
TU243002 lncRNA upstream 154016 4033896 ~ 4035077 (-) True G205169
XM_034309832.1 mRNA downstream 2730 3792584 ~ 3865849 (-) False kcnc3a
XM_034309831.1 mRNA downstream 2730 3792584 ~ 3865849 (-) False kcnc3a
XM_026916270.2 mRNA downstream 2732 3783563 ~ 3865847 (-) False kcnc3a
XM_026916272.2 mRNA downstream 2732 3783829 ~ 3865847 (-) False kcnc3a
XM_026916271.2 mRNA downstream 2872 3783563 ~ 3865707 (-) False kcnc3a
XM_034309839.1 mRNA upstream 2248 3882128 ~ 3888471 (-) True lin7b
XM_026916866.2 mRNA upstream 11294 3891174 ~ 3901444 (-) True snrnp70
XM_034310039.1 mRNA upstream 24907 3904787 ~ 3907427 (-) True pex11a
XM_034310036.1 mRNA upstream 37792 3917672 ~ 3932820 (-) False strada
XM_026916870.2 mRNA upstream 37792 3917672 ~ 3932820 (-) False strada
XR_004579380.1 other downstream 454812 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 454812 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 454812 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 711870 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 713149 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 160601 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 213033 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 842537 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 848214 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1209456 5089336 ~ 5091922 (-) False G205633

Expression Profile