RNA id: XM_026916281.2


Basic Information

Item Value
RNA id XM_026916281.2
length 5998
RNA type mRNA
GC content 0.50
exon number 19
gene id srebf1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10847701 ~ 10869084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCATCACGGAGCTGTTGAGAACCAAGATGGACGTATTGTAAACAAGCGAATTGTTgcttatttttagtcatttatttagacattaattttatttaaaaaattttagcATCTACATTCACTTAAATcactataataatatttttaatcgTAGTAAGAAAAAGAGTACATTCCCCGACGTGTTGGTGTATTACTTGGCGTTTTAAATACCGGGTTAGCCTCATCAGGTTAATATGTATAATGCTACTGTAGAACCTGGTCAGAAAACCAGACATTTTTATCAATACAGAGACAAATAATCCAAAACAAACGTCCTATCTATGTGCTTGATACACTCGTGGCTCCATAGCGAGCTAATTAACGTGAACTAGCGTCCTGCAAATTAGCCCGTGAAGCTCATTGGAATACCGTTCACATACTTGAAGGTAGCGTGGGAAGCGTGACGTAGACGGAGAGCTGTGCTTTGATTGGTCGCAGGAGGTGTCACTCACGCGTCGGTGTTTCTGGGGTTCGCTCGCCCGTTAGCACGCGCCTGCACCGACTAAACTCTGTTTAGACAAGTTTGTCCTGTTCGCTAGTGTGGAAATGGCAGCAGGCAGGATGTTGACAGATTAGAAACAAAGTTGGATTTTTCTGAAACCTGAAGAGtctgttttaaacaaatgtacCTGTATATACAGTTGCGAATTACTTGCAAGAAGTTTCGAGTTTATATGGAATAACGTTTTGTCTTTGGATTTGAGTATTACACGAGTCAGCTGTAGTGAGTGAAGCCAATCTGCGGAAAGATGAATAATCTGTCTTTTGACGATCCGTCACTGGATAGCTTGGATCCAAGTTTATCCCTAAATGATCCAAGTGATATTGACACAGCTCTGCTGAACGACATTGACGACATGCTCCAGCTCATCCACAACCAGGAGATGGAGTTCAGCAGCTTGTTTGATCACACCTCCTTTCCACCACCACCAACTCCAACGCATGACCTTTCAGCCCTGGCCCCTTCCAGCTTGGCTCCCACTTCCCGCccttcctccacctcctcctccacctcgtCCATCCTGAGCAGCAGCCCACATCTGGATGCTCTGCTAGGTCCCCCTGTCAGCCGCAACTCCTCCACCCCAGACAAGACCTTCCATGCCTCAAACTTTCAGCAATCTCCCTCCACCCAGGTGACCTCTACACCTGTGAAGCCAAGCCAGGTGAAGCAGCCCAAAGCTCAAACAGCTCAGCCTGTGCTTCACCCGCCAAGCCAGGCTCCCCAGAGCCCTACGTTCTCCTCAAGCCCTCAGCAGCCTGTGACTAACTATGCAAACCAGAATGGATACACTGTCCCTCAGCAGGGCTCTCCCCAGCCTGTGCCCAGTGTCGCCAGCTCTCCACAGAGTGTTCAGCCGGTAGCCATCCAGGCTCAGGTCCAGAGTCTGTCCACATCTCCCATCCTCACCACCTCCTCCAGTCCTCCAGCACAGACTCACGTCCAACAAGttcctGTCTTGTTGCAGCCTCAGTTCATCAAGGCAGAATCTCTCCTCCTCACCACCCTGAAGCCGGACGTGTCCATGGTAACTACAGTAGCATCTCCATGCATCACGTCTCTGGCTACATCCACAGCTCCAATGCAGAGCACCTCACTGCAGGCTCTGATGAATGGTGGGACTATCCTGACCACAGTTCCAGTCATGGTGGACACAGAGAAGCTGCCCATCAACCGTATAGCCATCAGCAGCAAGCCAGGTATGCAGACTCAGAAAGGCGAGAAGCGAACAGCACACAACGCCATCGAGAAGCGCTACCGCTCCTCCATCAACGACAAGATCATCGAGCTCAAAGACCTGGTGGCCGGCACCGAGGCTAAGCTGAATAAATCTGCAGTGCTGAGGAAAGCCATTGATTACATCCGCTACCTGCAGCAGGCCAATCAGAAACTAAAGCAGGAGAACATGGCTCTCAAAATGGCCAACCAAAAGAACAaGTCTCTGAAAGACCTGGTGGCCATGGAGGTGGACGTGAAGACTGAACTTCCCACTCCTCCAGCCTCCGATGCCGGCTCGCCCGAACCCAGTGGCTCCTTCTCCCACTGCAGCAGTGACTCGGAGCCTGACAGTCCCATGGGAGAGGACAGCAAGCCTATGTCCAGTGCTGAGAAGGCTGCTGGAGGGATGCTGGACCGCTCACGGATGGCTCTGTGTGCCTTCACCCTCCTCTTCCTGTCCTTCAACCCGCTGGCATCTCTGATGTGTGGGAGCCAAAGCAGGGCTGGAGAAGCTGTTCCTCCAGGCCACTCAGGAACTGGCAGGACCATGCTGGCATTTGATAATGCAGCTGATTCGTGGGGCTGGATGGACTGGATGCTGCCCACTCTGTTGGTGTGGCTGCTAAATGGAGTTCTGGTAGCTGGTGTTCTGATCAGGCTATTGGTGTATGGAGAGCCCATCACTAGACCACACTCTGAATCCTCCGTCCTCTTCTGGAGACACCGCAAACAGGCTGACCTCGACCTGGccagaGGAGACTTTGCCCAGGCCTCTCAGAACTTGTGGACATGTCTGAAGGCTCTTGGTCGTCCTCTGCCCACCTCTCAGCTGGACTTGGCGTGTGCTGTGCTCTGGTCCACCCTGCGTCTGTGGCTGCAGAGGCTGTGGGTGGGCCGCTGGCTGGCCTGCAGGGCTGGAGCTCTGCGTGCTGATCGCCCCCTACAGGAGGATGCACGCAAGAGCAGCCGTGACGCTGCCCTTGTCTATCACCGCCTGCACCAGCTGCACATGACTGGGAAGCTGGGCGGCAGCCACCTGTTTGCAGTGCACATGGCTCTGAGTGCAGTGAATCTAGCCGAATGTGCTGGagactgtctgtctgtggcCACGCTGGCCGAGATCTACGTCTCTGCTGCCCTGAGAGTAAAAACCAGCCTGCCCCGCCTGCTGCACATCACCTCTCGTGGCTTTCTGAGTCGTGCTCGACAGGCCTGTCTGTCCCCCAGTGGCAGTGTTCCTCCTGCCATGCAGTGGCTCTGCCACCCTCTGGGTCATCGCTTCTTTGTGGACGGTGACTGGTCTGTACGCAGCACCCCTAAAGAGAGCATCTATAGCCAGGCTGGAAACACGGTGGATCCTCTGGCTCAGGTGACTCAGGCTTTCAGGGAGCACCTGCTGGAGAAGGCTCTGTACTGTGTCGCTCAGCCACGTGGAGACAAGAGCCCCAACGAGGGACAAGGTGAGTACTCAGATGCCCTGGAGTACCTGCAGCTGCTGAACAGCGCCTCTGATGCTGCAGGAGCTACCACGCAGGCCTTCGCCATCGGCTCCAACATGGCCACCGTCACCGGCTGTGATCCTCACTCAAAATGGTGGTCGTCAGTTGCCGTGGTGATTATTAACTGGCTGCAGGGAGATGACGTAGCAGCAGAGAGGTTGTATCCAGCGGTGGAACACCTTCCACGCAGTCTTCAGTCAGACGAAAGTCCACTACCCAAAGCCTGTTTGAACATGTTTAAAGCAGTGCGGGCCCTGCTGGCCAAACCAGAGAACAGACAGCTGAGCCTGAGCTACTGTGAAAAAGCCAGCAGCTTGTTCAGAGACAGCCTCAATCTGGGGCCACACTGCAACAGCACCACTTTAGACAAGTTGGTGCAGTTGTTACTGTGTGATCTGCTGCTGGTGACACGCACCAGTCTGTGGCGAGAACAGCAGATTTGTTCTCCTGCTTCCCCTCAGCAGAGCTCAGCCTCAGCCGCTTCTCCCGCTGAGCTGCAGGGCTTCCAGCAGGACCTGAGCTCTCTGCGCAAACTCGCCCACAGCTTCCGACCCGCCATGCGTaggTTGTTTCTGCATGAAGCCACTGCCAGGCTGATGGCAGGAGCAAGCCCAACGCGCACACACCAGCTCCTGGACCGCAGTCTGCGCCGCCGTGCCACACCTGGAGGCAAAATCGAGGAGTGTGAGACACGACCAGGCCAGCGTGAGCAGGCAGAGGCGGCCATGTTGGCATGTTGGTATCTGCCTCCATCGTTCCTGTCGGCCCCGGGCCAGAGGGTGGGGATGTTGGCAGACGCTGCACGCACTCTTGAGAAGCTGGGGGACAAACGCACGCTCCACGACTGCCAGCAGATGATCATCAAACTGGGCAGCGGGACCACTGTCGCCTCCACTTAGAGACAAAGCAAAAGACTTTCAAACCCCCCTGCCCCACCACCTTCACCCCACCCTCCTGCACTAACACAATATCAATCTCAAATTTCTGTGCCACATTTTCTGGCTACAGGCTTCAGCCTTTATCAGTTAACCAGCTCATTTTAGTATGTCAggttttttcctattttttcatttctttttaactttgcccttttttctttacagctattatttaaataatttaataatttaatttgtttgtccTGACAAAATGCTGATACTTTTATGGTTAATGTTCAACATCTTACTTAAAGGTGTGGTCAGtaattttaaatgcagaaatagTTTGTATTTGGCAAAGTTCTTGTAAGGTTTTAGGCAGCTGTCAATTAAACATCAGCTCAGAGGAGAAACACAGTAAAACAGTATGGACACCAAGACTGGACACCATCCAATCAATCAGAACAGTAGAGGTGTTTCTACTTGCCTGTCAACCCTGAAAGCTGCTTTATCACACCAGATTTAAGGCTTACCAGCCTACGCATGTTTTGGGGGTGTGTGGCTTTGGATTCAAAACAACTACATTCAGCTAATTTCTCTTAAAATTACTAACTACACCTTTACAGTAATATTTCACATATAGATGCTGTCTGGGCCGCTGTAGTGTTCCTGTAATGAGGTGTTTTGTAAGCACCAGCTTTGTCCACTAGATGGCATTTTATTGAGCGGCACTGGACACTTATGAGCGGCATTACAGGGTGATCGGACATGAATCATTGTAATTCCCCTAAATGTGTAATACCAgctttccactcacagaacaaTCCTTGTCTCCGGTCGTAATGATGTGGTAgtgcatgtacatgtgtgtgcatgtttctgtttaaGCAGCATCTCAGACGCTAGTTTTTTACCTGCTGAGTCTACTGGTTTGGTAGAGCATGGCCAGGTGACTCAGCTGCCTGGAAATCAAGGATTATTCTGTGTGCAAGGGAGCTAGGTGTTAGGGGAcatgatgagtgtgatgagatTTCCTTTTCATTACATCTGTACAGACCTTCTAATCTGCACTACCCACACTGGGGCTGACTTCTACATGATTTAAGAGCGTATACGGCTTTACAAGGTTCTTTTCTTGTAACGTTTccttgtatatatttttaaagatgtgtatttataattttgtctaaAGATGTGGGTGAACAGTATTTTCTAAGAACAGAGAAAAGGGGACTACTTGGATGTTTCATTGGAACACAGTGCTAGAGCAGAAAACTGACTTATGCAGAAACAGAATAGTGGAGTTAATAAAGTGCTCATTGCTGTGAATATGGGACCAGTTTAGAGTTTCACTTAACAAGTGGACAATCTGACTGCCGGATATCTAGTCCCAGGTAAGTGGAAAAGACTTCTACAGGGTGCTCATTCTCGAGGAGTCTTGTCTGTTTGCACTATTTAGAGAGGTAACGGTTACTATTTGAAGAGTGCAGCTCCTGAACATACTTGGTGGTAAAATGTATGGAGGGAATGACACCATGGATGGTCACAAAAATATCTGAGCCAGTCTGTTTTGACACAGTTCACCATCATTCTTACCTTTATCCAAAAGCAGGATTTTTAGATGAGACAGTTCTTTGAGAGAGCCCCATCTGCATTCCACTTTCAGCCACTGTTATGTTTCAAATACTCTGTTAAATTTACAGTCAAGTTTCAGAAGTTGTATTGTAAATGGCAGACTCATGACCTGTATGCTAATCAGTGTGTAGTGCTCATAGTCAAAATCTCAACAAGAATGTTTGAACAGTCTGTCCAATTTGCTTTTTGATTTATTCTTGACAAtgtaaataaaagttgttttgtAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247589 lncRNA downstream 213551 10633535 ~ 10634150 (-) True G208998
TU247571 lncRNA downstream 328754 10518342 ~ 10518947 (-) True G208980
TU247554 lncRNA downstream 397161 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 505479 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 556816 10221710 ~ 10290885 (-) True G208771
TU247803 lncRNA upstream 219929 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 349575 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 349584 11218668 ~ 11221366 (-) False LOC113528410
TU248181 lncRNA upstream 519876 11388960 ~ 11389231 (-) True G209529
TU248190 lncRNA upstream 531638 11400722 ~ 11401423 (-) True G209538
XM_026916885.2 mRNA downstream 289901 10546321 ~ 10557800 (-) False nptx2a
XM_034309701.1 mRNA downstream 289901 10546321 ~ 10557800 (-) True nptx2a
XM_026916269.2 mRNA downstream 320415 10485735 ~ 10527286 (-) True baiap2l1b
XM_034309977.1 mRNA downstream 377185 10451272 ~ 10470516 (-) False tecpr1b
XM_034309976.1 mRNA downstream 377186 10451272 ~ 10470515 (-) False tecpr1b
XM_026916143.2 mRNA upstream 2950 10872034 ~ 10898540 (-) False LOC113527942
XM_026916142.2 mRNA upstream 2950 10872034 ~ 10898540 (-) False LOC113527942
XM_026916141.2 mRNA upstream 2950 10872034 ~ 10898540 (-) True LOC113527942
XM_026916800.2 mRNA upstream 74154 10943238 ~ 10962840 (-) True tbl3
XM_026916997.2 mRNA upstream 140203 11009287 ~ 11011550 (-) True rcvrna
XR_003402902.2 other downstream 377183 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 462581 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1116451 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1373223 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1428117 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 563426 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 667476 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 696926 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 830822 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 886741 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile