RNA id: XM_026916293.2


Basic Information

Item Value
RNA id XM_026916293.2
length 2050
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113528041
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16615091 ~ 16634737 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCGGTCTTGCAACCTGAGCAGTCTGTTTTTGGCAGTGTGCTGCTTTCTATTTGTTTTAAGCAAAACACATTTGACTCAGGTTACCCCTTTAGCAATGGCTTTTTGGGAAGAGCTTCTCCTGCAACCTACAAGTACAGGCATATTGCTTGGTCTTGTGATGATGTTGCTGTTGATTGTTTATCTACTTTCTTCTGATGCCAGCTCTCAGGAAGAAAACAAGGAGCCTCCGGGTCCTAAACCACTGCCTATCCTGGGAAACATGCTGCAGCTGAACCTCAAAAGACCCTACCTGACTCTATGTGAAATGTCAAAAAAATATGGATCAATATTCACTGTGTATCTTGGGTCTAAGAAAGTGGTTGTCTTGGCAGGATATCAAACCATCAAACAAGCACTTGTAAACTATGCAGAGGAATTTGGAAACAGAGATATCAGTCCCATTTTCTTTGACATAATCAAAGGACATGGAATTCTGTTTAGCAATGGTGAAAACTGGAAAGAAATGAGACGATTTTCCCTCACCGCTCTTCGAGACTTTGGGATGGGCAAAAAAGGGAGTGAGGAGAAAATCATAGAAGAAACACATTATTTGAGGGAAGTGTTTGAAGAATTTCAAGGGAAACCATTTGATACTTCCCAGCCATTAAATTATGCCACCTCCAATGTCATCTCAGCCATTGTGTATGGAAGCAGGTTTCAATACAGTGACCCTCAGTTCAAAGAAATGGTTAACCGGGCCAAAGAGAACATCAAGCTTAGTGGCTCACCTTCTATACAGATATATAATATGTTTCCCTGGCTTGGCTGCTGGATAAAGGACTGGAAGCTCTCAATGAAAAACTGTGAACAAAATCTAAAGCAAGTAAAGGAGCTTGTGAACAATTTGGAGGAGACACTAAATCCTGAGGAAACCAGAGGCTTGGTTGACTCTTTTCTTATACGCAAAAAGAATGCAGAGAAAGCTGGAGATGAAGACACTTTGTTTCATGAACAGAATCTCATTATAACAGTTGCCAACCTTTTTGCTGCTGGTACTGACACGACTAGCACAACACTGTGCTGGTGCCTTCTGTTAATGGCCAAGTATCCTCAGGTTCAGGATCATGTCCAGGAAGAGATTGACAGAGTCATTGGAGGTCGTCAGCCACTGGTGGAGGACAGAAAGAATTTGCCTTACACAGATGCAGTGATCCATGAAACTCAGAGACTAGCTAACATAGTACCCATGAATCTCTCCCACACCACTAGTTGTGATGTTAAATTCCAAGGCTTCTTCATCAAGAAGGGTACCTGTGTGGTTCCTCTCCTGACATCTGTGTTGAGGGATGAGAGTCAATGGGAGAGTCCACAGACCTTTAATCCAGCACATTTCCTTGATGAGCAAGGCCGATTTGTTAAGAAGGATGCCTTCATGCCTTTTTCTGCAGGGCGCAGGGTGTGTCTGGGAGAGAGTCTGGCCAGGATGGagctcttcctcttcttcacctCCTTAATGCAGCACTTCCGCTTCACTCCACCACCAGGGGTCTCTGAAGATCAGCTGGACCTCACTCCAGCTGTGGGCTTCACATTGAGCCCCTCTCCTCACAAGCTGTGTGCAGTTAGCCGTGCATCACACATAATTTTAAGAGCCCAAAATGTTCTTCAAAATGTactgaaatgtgtaaatatactTACAATTTTATGTCCTTAAACATGCTAAATAATATTAATCTCATACTTTGATCAAGTGTTTGCAAATAAACTTTGAAAGTAGAtaccacaaataaaaataaataaaattgtaattatattacacatatatactgtGAAATATACTTTTAGTTaaaatttagtttaattaaagaaatacgCTTGTTAGATACTTGTGTtcaaatatattgtaaattttTACAATGTATGTGTTAAAAACAAGAATGCTAGAAATACACTTTTAACATGGTACACATTAGAATACTTCATGTAAGTATACTCTTTAAAAAAGTGAATtgtgaaaagtaaaaatatatttaagaaaaaaagtcaaattaaaacatttttggcttatc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07423 CYP2W1; cytochrome P450 family 2 subfamily W1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251473 lncRNA downstream 41524 16573120 ~ 16573567 (-) False LOC113528039
TU251459 lncRNA downstream 117859 16478891 ~ 16497232 (-) True G212319
XR_003402922.2 lncRNA downstream 159244 16453560 ~ 16455847 (-) True LOC113528275
TU251176 lncRNA downstream 461521 16151738 ~ 16153570 (-) False LOC113528178
TU251177 lncRNA downstream 461577 16151105 ~ 16153514 (-) False LOC113528178
TU251546 lncRNA upstream 46447 16681184 ~ 16690337 (-) True G212395
TU251514 lncRNA upstream 126495 16761232 ~ 16764671 (-) True LOC113527915
TU251619 lncRNA upstream 197231 16831968 ~ 16832219 (-) True G212463
TU251855 lncRNA upstream 543791 17178528 ~ 17179748 (-) True G212626
TU251866 lncRNA upstream 649763 17284500 ~ 17284707 (-) True G212637
XM_026916292.2 mRNA downstream 16403 16572545 ~ 16598688 (-) True LOC113528039
XM_026916166.2 mRNA downstream 69451 16538381 ~ 16545640 (-) True LOC113527963
XM_026916944.2 mRNA downstream 77837 16501121 ~ 16537254 (-) True LOC113528411
XM_026917098.2 mRNA downstream 284552 16326885 ~ 16330539 (-) True sox8a
XM_026916252.2 mRNA downstream 387649 16225651 ~ 16227442 (-) True LOC113528022
XM_034310191.1 mRNA upstream 36408 16671145 ~ 16688599 (-) True LOC117595684
XM_034309987.1 mRNA upstream 36408 16671145 ~ 16677834 (-) True LOC113528100
XM_026916431.2 mRNA upstream 56773 16691510 ~ 16736757 (-) True abca3b
XM_026916081.2 mRNA upstream 103204 16737941 ~ 16752068 (-) True ccnf
XM_026916082.2 mRNA upstream 127689 16762426 ~ 16765341 (-) False LOC113527915
XR_003402969.1 other downstream 1143179 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1924959 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 2094116 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 2124316 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2585450 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 658114 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 658114 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 658114 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 658114 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 658114 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile