RNA id: XM_034309903.1


Basic Information

Item Value
RNA id XM_034309903.1
length 3541
RNA type mRNA
GC content 0.47
exon number 14
gene id si:ch211-198m17.1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5698087 ~ 5730023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAAGAGGGGCGAGGACTTTACGCACTCTGGAAAAAGCACCTGTAGCGGATCTGCTCGCTCATCACTGTTCTTCCTGTCCACGTCCCAGGATCACAAGCTCACCCAGCTTTCATCCTGAAGTCTACCTGTGATTGCTTTacaagtttttctttctttctccatctttgAAGCGGAGACTCGAGTTTGCGCAATGGTCCGAGTTGAGCGGCGCACCGCGGCTTTCCTGCACCAGCTTGTCCTGGCGCTGTGCTTGACATCAGCTGTCATGGGCACAGAAACAAGCACGTATTCCAGCAGCACCATGCCCACAACTCTCTCTACAGAAACAGTCAGCTCAACCATGACCTCTCATGGTACATCTACAGAACTTTCTTCTACCAAAGTGACAGACAACCCAGACATGGGCACAAGCAGTACTGCAACAACATCTGTTAAGACAGAAACAGCTTCTTCAACTGCACACCACAGTGAGCTGAATTCTCCAGAGAGCAGCATTGCATCCATTACAGCAACACTTACAACTCATGGGCCTATGTCCAGTGCAACAACAGATCCCAGAATGGTATCTCTCACTTCTACAAGGTCACAGCAAACCGAAATCCCAGAAACAGAAAATGATATGTCTGACAGAACCACATCAGAACCTTTATCTCCTCACAGCCTAACAACAGTCTCAGTCTCCTCTACCTTCAGCGATGTGGCCTCTGGTACAGCTACAAACAATGAATCTACACTTACTTCTACTCACACTGCTGAATTTACTCCCACCATTACTGATTCTTCAGACAGCACGATGAGCACCATCATGCCCAGTCATTCTACTGTCATATCTTCGCCCAGCTATAGCACCACTCCAAATACACCAACTCCATCAACTGAAGCTTTCATTGGCACAGAAGCAAACTCAAATTCCAGCACTACCCCTACAGAGACAACAGCCAGCTCAGCCATGACCACTCATGGCACAACAGAATCACAAACAGAACAGTCTTCTACCGTAAAAATAGACTTCACAGAAACTTCTGTTACGACAGAAACAGCTTCTCCAACTACACACCACACTGAACCGACTTCCCTGACAAGCAGTATGGCCTCCATCACAAAAACAGATATGTCCGACACCACCACATCAGAATCTTTATCATCTCCTGAGAGCCGAACAACAGACTCGCCATCCTCTACCTTCAGAGATTCCACTACTGCAGTAAAGAGCACGGCTGCTGGTGCAACTACAAACCATGAATCCACACTTACTTCTACTCACACTGAATCTACCCCCACTCATTCTTCAAATAGCACAATGAGTACCATCATGTCCAGCACTCATACTACAGTTCCACCTTTGTCTGACAACAGCACCACCCCCTATACACCAACTACATCACATGAAGTGACCGACAATTCCAGCATAACGCCAACTAATACCCCAGATCATTCACCTGTCACAGACTCAACAGTGACGGACAACACAACCACTCCTGCAGCTACAACACATGTCAATGCTACAACATCTCATTTTGAAACAACTGTAAATGCCTCAAAAGAAACACCACTAATCACTGCCACAACACTTGATTTGAGCACCACTGAAGATTTTACATCAAGTAACACTACATTTACATCTGTAACAACAGTCAATACCTCAACAGACACAGTACATAGTACAGAAATGCCAATCACTGCTACAACACATTATTTAAGAACAACTGAAAATTTTACAATATCAGATAATATCACTACTACACCTACACACAACATCAGCACTACACCCATACCAAGCATCACTACTACAGCCTCAAATGTCAGCACTATGACCTCAAACATCACCACTACACCCACAAATGTCACCACTAGACCCTCAGACCTCACCACTACATCCTCAAACATCACCACTACACCCACACCAAACATCACTACTACACTCCCACACAACTTCACCACTCTACCCTTTAATGTAACTACTACATTCACAAACATCAACACTACACCCTCAAATGTTACCACTATACCCTCAAACATCACCACTACACCCACACCGAACATCACCACTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACGCCAAACATCACCACTACCCACATGCCAAACATCACCGCTACACCCACACCAAACATCACCACTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCACTACCCACATGCCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACACCAAACATCACCGCTACACCCACTCCAAACATCACCACTACACCCACACCAAACATCACCACTACACCCACACCAAACATCACCACTATACCCACACACAACGTTACTGCAACTACACAAACCAACAACATCACTACACCAAAAAGCAATGTCACAGCTGAGCCTCCGGTTCCATCTACTACTAAACCTACTAACACAACCACCATACCAGTTACCTGTCCAGCCATACCCTGTCCAACTCTCAGCGTGTGTGTAAACTCCATCTGTGAGTGTCTGGCTGGAATGTACATGTCACAAGGCCAGTGTGTTGAAGcAAAAGTGTTTCCAGGAATGCTGCATTTATTAAATGAAcaatttaaacctgaaatgaaTGATCGTAACTCTGAGGCATTTCGCAACACAGCTAAAAGTATCACTGAATCGctGAATGACATTTTCAGTAAATCAAACGGCTACTTAAAATCTACAGTACTGAAGCTAACtaatGGCAGTGTGGTGGCTACTGTGAATAGTATATTTGATAACAACTCTACTGCTACGGAGCAGACCACAAAGCAGCTTATAACGGATGCCATAAAAAATGGCAGAATCCCTAATGCCAGTTATACTTCTACGAGTCTTTGTGCTCAGAATCCAGCTCCATGTGACACCGGCACCACAGAGTGTAGTGATAATACAGATGGTTCTGCTAGGTGCTCCTGCATGCCGGGCTACATATCAAGTCTATTTACTCCAAGaagctgtacagcctGTCCCAGTGGCCAGAGAGCAGAGGGCCAGGAGTGTGTTCCgTGTCCATTTGGTTATTCTGGCTTCAACTGTAATGACTCGGCGTTGTTGGCGCTGGTGGTGGTTGCCGTCGTTTTAGGTGGGATTCTGCTCATCCTGGTTTTGGCCCTGCTCATCTTCTGTGGGCTCTACGGGACAAAGCGTGCCTCCAACCCTGGTAGTCCTTACGCCCCAGATGAGTTCCAGACTTGGCCCTCCCACACCATCACTCCCATCCCTCGTGCATCTGTCGGCCACAATGCTAACTCTGAAACTTATGATACAGAGATGCCCATGCCAGACAGAATAAAACCCACCAATGGGTTGgtggGGCTATAAATCAGAGCAGTGACGGCTACTCATGATATGagaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244080 lncRNA downstream 66168 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 413182 5280730 ~ 5284905 (-) True LOC113528378
TU243534 lncRNA downstream 606165 5089336 ~ 5091922 (-) False G205633
XR_003402949.2 lncRNA upstream 222775 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 457451 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 473289 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 543793 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 916074 6646097 ~ 6647814 (-) False stat5a
XM_026916724.2 mRNA downstream 6815 5657837 ~ 5691272 (-) True mpp3a
XM_026916725.2 mRNA downstream 6815 5657837 ~ 5691272 (-) False mpp3a
XM_026916072.2 mRNA downstream 611064 5081588 ~ 5087023 (-) True baxa
XM_026916112.2 mRNA downstream 658226 5015567 ~ 5039861 (-) False gpatch8
XM_034310090.1 mRNA upstream 27121 5757144 ~ 5777225 (-) False znf281a
XM_034310088.1 mRNA upstream 27121 5757144 ~ 5777225 (-) False znf281a
XM_034310087.1 mRNA upstream 27121 5757144 ~ 5777222 (-) False znf281a
XM_034310085.1 mRNA upstream 27121 5757144 ~ 5777222 (-) False znf281a
XM_034310086.1 mRNA upstream 27121 5757144 ~ 5777222 (-) True znf281a
TU243535 other downstream 606165 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 963201 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 963282 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 1580444 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 1653512 4040481 ~ 4044575 (-) True G205173
TU244177 other upstream 24744 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 111114 5841137 ~ 5841477 (-) True G206282
XR_004579400.1 other upstream 210839 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 223710 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 223710 5953733 ~ 5961050 (-) True LOC113528542

Expression Profile