RNA id: XM_026916301.2


Basic Information

Item Value
RNA id XM_026916301.2
length 5955
RNA type mRNA
GC content 0.55
exon number 31
gene id helz
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10298887 ~ 10341715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTCAGTGTGGTATAAAGCTACATGACGGTAGCATTTCCAGGAAGCCGCGCGCAGTAAATATTTGACCATAATGCCGTGCGACAGGCTGACAAGTGGATTCAAGATGGCGTAGAAAGTGAAGCTAGATACTCTGTCCCAGAGTCATGGAGGACAGGAGGCCCCAGAAGTCATGTGAAGAGGCCGTTGGATCGTTAGTAAGGCAGGACTATGACGCGGCGGTGGCCCATAGCACGGACGCCCTGCTGGCCCTGGGATCGACCCCACCCACCCCCAGCACACCCCTCCTCCGCAAGTGTGCACTCCTCTACCGCATAGCAGCCCTGCTCCAGCTGAAGGAGTATGATCGAGCTGATGAAGACTGTAAGCATGtgctggcTGAGGAGCTGGGTAAGGGTGAGGGAAGTTTCAGGGCTGGGCTGCAGAAAATGATGCTGGATGGAAGCCTACAGGAAGTCTTTACTGTTCTTTCTAAAGCTCTGTATGGAGAACCACTGAATGGAATCATGGCAAAGGATATGACGAGGTTGAAGATACTCCTGTCTGAAATGGAGGCTGTAAGCAGTAAAATGGTGACGGAGCAGtcaggagagacagaggaggACGTTCAAGAAGGTTGGCAGTTTCGGCCTCCTCCTCGAGGGGTGACTAGCAGCGAGGAGTACACATTGTGTAAAAGGTTTCTAGAGCAGGGTCTATGTCGGTATGGTGCACAGTGCACTTCAGCCCACTCTCAGGAGGAGCTGACTGAGTGGCAGCAGCGCTATGCCTCCAGACTCATCCGCCTCAAGCAGCAGCAAGATGGGAAGCATTACACTGAGAACTACACAGAGGCCCTCATTGAGAAGTGGATCAACTCCCTTACCCCAGAGAAAGTGCTTAATGACTGTGTAGATGGAGTTACAGTGGAACATAACTCAGATCTTTCAGTCACTGTCAACACCAAGAAGTCATCCCATGCCTGGACATTCTCACTTTACTGCAAGCCTGCCCGCATGTTGCACCGCATCGCCCTGCTCTACGATGCCAACCGAccacacttctccatcacagCCGTGTCGGCAGGTGACACCTCCACCCAGGTACCCCAGCAGGTGTGTGAGGGAGGCTGTCAGGAGTGGACTGGAGTAGGATTGCTACAGAATGGCATGGATCACTGCCTCTACACTGTGGAGGTGGCGTTTAGAACGGAGATATTTGGCACTTTCCGCCAGACCGTAGTCTTCGATTTCGGCTCTGAGCCTGTGCTGATGCAGAGAGTGATGGTGGATGCAGCGTCTATTGAAGACCTGGAGCATTTGATGCAGGCACGGCAGCAGCTCCTGATGACAGCAAAGCGCTGGGACTCATCCTGCAAGACCATCGTGGAGTTCAGTCCCAATGAGAACATGGAGCTGGAGCGCAGTCTGCTCAGCCGCTATCAGATCCCACTGTCCGCTGACCAGCTCTTCACCCAGTCCGTGTTGGACAAGACTCTCACACGTGAGAACTACCAGTCCCGCCTGCATGACCTGCTCTACATTGAGGAAATTGCACAGTACAAAGAAGTTAGCAAGTTCAACATTAAGGTAAACCTGCAGCTGGTCTCCAGCTTCATGCTGACGGGAATATCTGGGGGTGCTAAGTACGCCCAAAACGGCCAGCTGTTCGCCCGCTTCAAATTAACAGAGACCCTGTCCGAGGACACACTGGCAGGACGGCTGGTGATGACGAAGGTGAActcagtgctgctgctgcctgTGAGCCGGGATCGGATGTGTCAAGGCCAGCCTGCCAGTGCCAAGGAGCGCGTCTATGAGGCCTTGATAGAGGAGAAGACCAAGGACTACATCTTCTTGCGCGTCTGCAAGGACTGCTGTGAGGAGCTCAGTCTGATTCCTGACAGGGAGCTGCAGGTGGAGCTGCAGTTTCAGCTCAATCGGCTTCCGCTGTGCGAGATGCACTATGCTCTAGACCGCCTCCGTGACAACAGCATCCTCTTTCCTGACGTCAGCCTAACTCCTATAATCCCCTGGAGCCCTAACAGGCAGTGGGACGAGCAGTTGGACCCTCGTTTAAACGCCAAGCAGAAGGAGGCCATTTTGGCCATCAccactccactgtcaatcaATCTCCCTCCCGTGCTTATCATTGGACCTTATGGGACAGGCAAAACTTTCACACTGGCTCAGGCAGTGAAACACATCCTCAAACAGCCTGACACACGGGTCCTCATCTGCACCCATTCAAACAGCGCAGCAGATCTGTACATAAAGGACTACCTTCATCCATATGTGGAGGCAGGCAATCCACACGCAAGACCTCTCAGggttTACTTTAGGAACCGCTGGGTAAAAACGGTGCACCCAGTGGTGCAGCAGTATTGCCTGATCTCTGGAGCTTACCTCACCTTCCAGATGCCCACTCGGCAGGACATAGAGCGCCACCGTGTTGTGGTAGTGACGCTCAGTACCTCACAGTACCTCTGTCAGCTTGATCTGGAACCTGGGCTCTTCACACACATATTGTTGGATGAGGCAGCCCAGGCAATGGAGTGTGAGACCATTATGCCGTTGGCACTGGCTAATAAGAGCACACGCATCGTGCTTGCTGGAGACCATATGCAGCTCAGTCCGTTTGTGTACAGTGAGTTTGCACGGGAGAGGAACCTACATGTGTCCCTGCTGGACCGGCTGTATGAGCACTATCCCTCTGAGTACCCCTGCAGGATCCTGCTGTGTGAAAACTACCGCTCCCATGAGGCAATCATCAACTACACATCGGAGCTGTTCTACGAGGGCAAGCTGATGGCCAGCGGCAAACAGCCCCAGCATAAGGACTTCTACCCTCTGACCTTCTTCACGGCCCGTGGGGAGGACGTGCAGGAGAAGAACAGCACGGCTTACTACAACAATGCTGAGgtgtttgagattgttgagCGTGTGGAGGAAATGAGAAGGAAGTGGCCGGTAGCGTGGGGAAAGCTGGACGAAGGCAGCATCGGCGTGGTGTCCCCCTACGCAGACCAGGTGTTTCGCATCCGAGCCGAACTCCGCAAAAAACGCATGCCCGAGGTCAGCGTGGAGCGAGTGCTCAACGTTcaggGTAAGCAGTTCCGTGTACTATTCCTGAGCACAGTTCGCACTCGCCACACCTGTAAGCACAAGCAGACGGCCATCAAGAGGAAGGAACAGCTGGTGGAAGACTCCACCGAAGACCTGGACTACGGCTTCCTCTCCAACTACAAACTCCTAAACACTGCCATCACACGGGCCCAGTCCCTAGTGGCTGTAGTGGGAGACCCCATAGCGCTCTGTTCCGTGGGCCGCTGCAgAAAGTTCTGGGAAACATTCATCTCCATCTGCCATGATAACGGGAGTCTGCATGGAATCACATTCGAGCAGATCAAGGCCCAGCTGGAGGCTCTCGAGCTGAAGAAGACCTACGTGCTGAATCCACTGGCTCCCGAGTTCATCCCCCGAGCCCTGAGAGCCCAGCAGCCCCAGGGACCCGGCAAACACCAGCACTCCCCACCTAAGGTGAAAGGACAGCTTGCCAATCATGCAGAGCACTTTCCTCCTGAAGGGTTTGttcagCCCAGCGCTGCTGTACTAATGGGGAATCCTATCCAGGCTTTCACTCCAACGGGAGGAGGAGCACCACCCTCTGGCAAATCCCCCAGTCCTGTACAGCGCATTGACCCTCACACTGGAGCCAGCATCCTCTATGTGCCCGCTGTATATGGGGGCAACATGGTCATGCCTATGTCTCTGCCGTTACCATGGCCAGGCTATCAGAACCGCTTTGCCATGGACCCTCGCATCATGAGCCACCAGGCAGCCATGGCAGCCTACAACCTGAACCTGCGGCCTGCCGTCAGTCGGGCATCACCAGTGCTTTATGGTCTGAACCAGCCTTCCCCGCTAGGCATTGGCCAACTGCCATCCACTGACAAGGACTTGCTGCAGGAACCTACTGCCAATGGAAAGGTTGACATTAATGGAAAAGTGGAACATAGCAGGCTGCTGACACCTGAAAGGAAAGCTCCTGAACTGAAGGACAAACAgGGAGAGCCTGAGCCAATTCAGAACAAAAGCCCTGAAACCCATGCCGGCCTGGTGTTTCCCTCCAGCCGCCTTCTGCGTAAAGACCCACCTGCCCAGCGTCCGCCACTCAGCTTCCCTTTACCCCCTCCTCACCCAGCATTTGCCCCCCATGCCCCTCCCGGCCCCCTGGCACACTATGGCCTTCCCAGACCTCCCCTTCGTGTGCAGACCCAACAGCCACAGCCCTCTGCCTTCCCTCCCTCATTTTTCAGTGGCCACCCTCTGGCCCAGCGCACCCTGCACTCTCCAGGGCTGGACGGCCTTGACGGAGGGGACAGCCTGATGGGCACTGTGCCTGATGAACTGAAGAACGTTGTAAGAGGATTGCCTCCCCAGCACCAGCCCCATCAGCAGCCTATGCGCCTCAACAGCTTCGGGGAGGAGAGTCTCGACTCGCTGCTTGGCGACTCTCTGGATGGTCAAAGCTGTTCTGGCATGGAGACGTTGGCTCCTCAACCACAACAGCAGCAGCCGGTGCGTCTAGGCCAGTGGAACGAGCCTGGGCCCTTCCTGCAAGGTGCTGTGCCTCCTTTCACCCTGGCCCAGCAGTTGGCACACCTGGGTCAGCCAAGCATGCGGATCCCCCAGCAGCTGCTCCGTGCCAACTGGGGCCTGGGCACCACTGCTGAGGACGAGCCCCGTGCACCCATGCCCAGGTATCCTGGTCTCCCACGTGAGTCGCTCCCTCAGGAGTCGTATGAGCCACGTGACGCTGCTGAAATGCCCCCTCCTCAGTCACGCCTGCTACAGTACCGGCAGGTGCAGCAGCCCCACATTCCTGGAGAGCTGCCCTCACCTTCCACTGCCTCCTCTGTCCTCCCTTCATCCACCTCAAGCAGTTCAAACAACCACAACCATACTCCGGTCCCAGGGCCTTTCCCTTACCCAGAGACCAGCCGTGAGCTCCCTTTTCACCAGCAACAGGCCTTCAGCCAGGCCGCCCTCCCTCTACCCCCTGAGCACGTGCCCGTCAAGTACCTTCTGCCTGAGGCTCACTGGCATCATGCCGGGACACAGCAGTCCTCGACGCTGGCATTTGGCCTGCAGCAGGGGCCCTTCacacagcttcagcttcagcagcacaaacagcaacaacagcagctccAGGCCCCACACAATGCCCTGCACAGTCTAGAAGAGTATGAACCACGAGGGCCCGGACGGCCCCTGTACCAGAGGCGGATATCCTCCAGCTCTCCCCAGCCATATGGGGAGAGTGTGGTACAGTGTAAGGAGTCTCAGGATCCCACAGCCTGTTTCACATACCCCCCTGCAGACCTGTGGCCCAGCCCAGGCCCCGCTCCACTCCACAACATTCCATGCAATGGAGCGAGTCACCTCGTCCCTCAGAGGGATATTTTAGTTTCTAAGGCGGTGAATGCTGCAGAGGAACACATCCAGGCTGAGTGTGTGCAGCAGCCTCCTCACTCCGCTGGCCTTGCAGCGCTTCAGCAGCATGGACAGTTTCCAGCCCTCCTGCCCAGCAAGCAGACCCCCCCAGACCCGGGAGGAGTGGGCTCCATGCCAGCCTCGGGCCACAACAAACCCCCTGCCATGTCCTATGCCAGCGCCCTCCGAGCTCCCCCCAAGCCCCGCTGCCCGCTGCCTGAGCAGACCAAAAAGAACAGCGATCCCATCTCTCTGTTACAAGACCTTAGCATAGGGAGTTCCAACAGTAGCAATGGCTATTACTCGTATTTTAAGTaagtgaatatataaatatatatgaattatataCACCCTATTgagtgaaaatgattaaaaaaaattgaataacaatctacaaaaaaattcaacaataaaaaaaacagcttttgatTTTGGTCGGATAGTTAgccttttgtgttttattattttttacttaatttag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K25168 HELZ; helicase with zinc finger domain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247238 lncRNA upstream 72384 10225583 ~ 10226503 (+) True G208701
TU247237 lncRNA upstream 77348 10221283 ~ 10221539 (+) True G208700
TU246973 lncRNA upstream 236922 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA upstream 236922 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA upstream 236922 10039409 ~ 10061965 (+) False G208488
TU247342 lncRNA downstream 193 10341908 ~ 10342224 (+) True G208783
TU247330 lncRNA downstream 30700 10372415 ~ 10417881 (+) False G208781
TU247335 lncRNA downstream 30700 10372415 ~ 10781459 (+) False G208781
TU247337 lncRNA downstream 71269 10412984 ~ 10417881 (+) False G208781
TU247485 lncRNA downstream 485310 10827025 ~ 10828913 (+) True G208911
XM_026916903.2 mRNA upstream 76013 10215045 ~ 10222874 (+) True LOC113528384
XM_026916863.2 mRNA upstream 103681 10192804 ~ 10195206 (+) True LOC113528352
XM_026916700.2 mRNA upstream 311114 9944306 ~ 9987773 (+) True rapgefl1
XM_026916963.2 mRNA upstream 372684 9917962 ~ 9926203 (+) True casc3
XM_026917260.2 mRNA upstream 381786 9912768 ~ 9917101 (+) False msl1a
XM_026916197.2 mRNA downstream 84344 10426059 ~ 10448685 (+) True lmtk2
XM_026916198.2 mRNA downstream 84344 10426059 ~ 10448685 (+) False lmtk2
XM_026916762.2 mRNA downstream 133639 10475354 ~ 10484206 (+) True bri3
XM_026917195.2 mRNA downstream 406431 10748146 ~ 10798178 (+) True fam20ca
XM_034310092.1 mRNA downstream 467739 10809454 ~ 10846584 (+) False LOC113528286
XR_003402918.2 other upstream 318933 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 1235572 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 1396210 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 2290620 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2445378 7853191 ~ 7853509 (+) True G207480
TU247340 other downstream 7687 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 30700 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 71269 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1195332 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 1225404 11567119 ~ 11577823 (+) False luc7l3

Expression Profile