RNA id: XM_026916319.2


Basic Information

Item Value
RNA id XM_026916319.2
length 5376
RNA type mRNA
GC content 0.52
exon number 30
gene id svilc
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5897560 ~ 5931876 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCATTTCTCCGCCTCTAAGCGAGGTGTCGTGCGCATGCGCAAATGCCGCATGGCTGGTCTGGCACAGCTGAGCTGACCCGTCTGAAGAGCATTGTTGCGTCCTCAAAGGAGTGACCACAATGGTAGACGGCTGTCTGATTAACAGAGCCAGCTCCTCTCccagctgctgattggtcgagACTTTCTGCTCTCCTGACTCCTCCCATTTCTTCCCCTCTTTGAAGTCTGGAGCTTAACTAGACCCCGGGATCAGTAGAACCCCTTTTATAAATGCGTCTTCAGCCTGCCCTTACAGCAGAACCCGCTTAGGCTCCCTAGACAGGAAGTGACAAAACAGGAAGATGGAAAGTTCAGCGGCAGAATCCCGAGCCGAGAGGATTGCTCGCTACAAGGCTGAAAGGAGACGAGAGCTGGCAGAGCGCTATGGAAACAGGGAGGAGGAGCTTCCGTCTAATTGGTCAAAGAGGGAGAGGGAAGGGCGTGGCACACACCGTGACTCCACCCTCTCTGACATGAGCCAATCACATGGAGTTAGCAGAGATGTGAAGGCACGTGGCGAAGCTCCAGCTGAGGAAGAGCTTAAAATCTCCAATGGATACAACGGGGATGCTAAATCCGAGAAGACCAACCTGAACAGGCAGTGTGTGTTGGATTCGTCCAGCATGCTGGCTACGGAAAATCATCCTGACCCTGACTTGCCGCAGCTTCGCACTCGCGTATCAGTGGGTAAACTGAAAAGGGCCCTGCTGCAGCAAAGCTCAAGCTCAGCTGCCTCTGATAAAGTTGCTGAAGGTGGAGGCTCTGACGCAGTCCGAGACCCATCAGTGAAAGCAGGATCTGATGGCGGTCGCCGGCGTACTCGACGCTACATGCCAGCGGGGGCTTCCGGGAGCCGTAAAACCAGCGACCGTTTCCGAACGCAGCCAATCACGGCCTCCGAGATGCAAGAAAGCTGCGAAGTCATGGACAACACGGATCAAGAAAACTCAGctgACGTGAAGTTGGATGAGAAAGCCATGATGAGTGTTGCTGCCAAGATGTCTCTGTTTAAGGAACTGGAAAAGAAGGCAGCTCCTGAGGCTTCGTCTTTCCTGAGGCCTCGTTCCAGCAGCAGCTTCAACTCTCGGGTTCGCAGAGCCCccactcagccaatcagctcTGATCAAACGGGACCGACAGACAGCTCTCATGTTGCTGTGCCAGGTGATGCCCAGACGGAACAGACACAAGCGGAGGCCGAGCAGGACGACGCCAGCTCTAAGCTCTCTCTGAGTGAGAAACTGGCACTCTTTAATAAACTCTCTCATCCAGTCATGCCTAGAGCTGCGGGGGGTCCTAGAGGGCCAGGAGGGAACGGCGGCTCTGTAGAAGCCTCAGAGAGACGCAGGCAGAAGGGAGCACGTTACCGCACGCAGCCCATCACTGCAGATGAAGTCAAcctggTGCAGAAAGGCCCTGTCCTGCTTCCTTCTCTGCATCTGCCCCCTGGCCTCTCTGAGCAGCAGCAGGCTCAATCTGTCAACCTCAAGCCCAGCGAAGTGCGTCTCTCTGACTCGCAGTCCAAGCCAACTGAAGATCACGAGCCCAAGACTGCTGTGCAGATCAAAGGCATCTTGAAGAAGACCAGCCCTGAAGACGGTGGCGTTAAGGGAGGGGCCAAGTCCGACAGCATCCCTACTGGACAAACGCCGGTGCAGAACGGACAGCGGAGTGAAAAGATTACACTTGTTACAGCAGGAGAATATTCTCCAGCTCCACGTTCTACTGCCCCCTGGAGGCAAAGAGTGAGGAAGGATGCCACCGCTTCCTCTCAGAGATCTCGCAGGCCCGCCTCCATGACTGAGGACTGCCTGTCAACACCACTGAGCACGAAAGACAGGGTGTCTGAAGTTCAGGAAGGTGCAGAAGAACATGAGCAGAGGAATGGGACGATGTGCAGCATGCCAACcacccagGATGAGAGCAACATTGCACACGAGCCTCCAGCTCAGTGTTGGGAGCCTGTCTATTCCTCTGTTTATGCTCTTCCTAGCACTCCCTCTCAGTACAAGATGTTTTTTaatgagagaAGTTTGTCGTACGAAGCTCAGGAGGTTTCCTCACCCACTCAAACACAACCACAGGCACCCTGCAGAGAAAAGGAGAACGCTGTGGAATCTGAGGCTCCCGTGCAGAAGGAGGCTGAGACGCAATCAATGAGTTTTGACGAACCACAGGAACCCCAGCAGCCTGTTGCCATGGAGAGAGCCAAAGAGGTCGCGACCTCTGACACCCCCTCATTCCTTGAGTGTCAGAGCAGTCCAGGAGACACAGAGCAGGACCTGAGCACTGTCTGCCAGTCGAACACTCCCATattgaGCTCTGCAGTAGCAGAGCATCGTCGTTCGGTCAGGCCGTCCCGCCGTAATCAGGGTTCGAGGAATCCGTTACGTGTTCTCGCAGCCCGAGACGACATCATGCAGGACTTCATGCAGGCCCACGAAGACCCTGAGGCCATGGAAACCAATAAAGCTGAAAATAATCACAGCTCCACTAACTCTTCATCTGCCAAGACTGTCCCAAGCCCTGTACCCTACAGCAACCTGATGCTAATCCTTGTGAAAGGATGCAGACGAGTGCAGGTACGCTTGGTGGAGCCGGTAGCTCGCTCCCTGAACAGCGGGGACTGCTTCCTGCTGGTCACTCCATCACTGTGCTTCCTCTGGACAGGGCAGCTGTCCAACACCTGCGAGAGAGagaagGCCTCTGCCATGGCCTCAATGGTTGTGTCCCAGCGGGATCTGGGTTGCCAAGCAACAGAGGTCATTCACTTGGATGAGGGATTAAACACGGACGACCCACAGGCTGCAGACTTTTGGAAACTTTTGGGAGGAAAAACCTCTTACAGTGgctGTTCAGATGATGATCAGCAGTATGAGATGGCGATTACAGAATCAAACTGTGTGTACAGACTGCAGGGAGACAGACTCCTCCCACATGAGCAGGGCTGGGCCTCAATGCCACGCCTCCCTCTGCTGGACTCCTCCCAGAGCCTGCTGTTTGACTTTGGCAGTGAGCTCTACTTGTGGCACGGGAAAGATGTTTCCCCCAGTGACAGGAAGCTGGCACTGCATTTGGCTCAGCAGGTGTGGAGCGGAGATTATGACTACAGCAACTGCAGGATGAACCCCCTCGACCCCTTCGGGAGCAACACCCAGATTCAAAGGAAGGGTGTGGGTCGGCCAGACTGGGCTCTGTTTGGCTGTGTTTTTGAGCAGAACGAGACCGTTCTCTTCAGGATGAAGTTTGCGGATTGGTGTAAAAAGATGGAGGATGTGACTCCTAACGGACAGGAAGTCAAGCAGACCTCTTTTCTTGTAGACTGTCCAGCTGACACATGGTCATGTGATGCCAAAGCCCTGTTTGCTGGTAGGTGTGTGTCAGGGGCGGAGCCTGTCATTCTACATGGTGTGGACATGCAGAGAGGGCGGGACTTGGTTACACTTGTCGATGGCCAGCAGGCGGAGCTCAGCACTGTTTCTGTAGAAAGTTGGCACACTGGCATGGGAGAAGATTGCAGAGTGGCTTCAGAGAGCATGGGGCAGTTACATGAGGACAACACATACGCTATACGCTGGATGTACCGTCTCAGTGTTACagGCATCTCTGAGGATGAAAGTTTGGACCAGGAAAGCTCTGCCCTTTTCATCTGGCAGGGAAGGCACTCACAGATCAACAGAAAGGACCTGTCCTTACCACTATCCTTTGCGAATGAGCCTCAGGTGAATGTAAAAGAAGGGGAGGAGCCACCGTGTTTTCTGCAGCTTTTCCAAGGAGGGCTGGTCATTCACAAAggacacagcaaacacacaggtgaCTGGCGCCTCTTTTGTGTGAGGGGTGCTGTGCCGTTAGAGGCCAGTCTGTTGGAGGTGGAGTGCTGTACCTCCAGCCTGCGCTCTCGTGGTTCTGTGCTTCTGATAAACATCCAGCAGGCGGTGCTTTACCTGTGGCACGGCTGCAAGGCCCACGCTAGTGCACGCCAAGTCGCCAAACACACCGTccagcagctcacacacacGTGTCCTCCTGAGATGGGATTGAGCAACAGCAGTCTGAATATTCAGGAAGTAGAAGAAGGGGCGGAGCCTGCAGAGTTCTGGAATGCTATTGGGCCACAGGATAGGAAGGCTTATGACTGCATGCTGCAAGATCCTGGCAAGTACAACTTCACTCCCCGCCTCTTTCACCTGAGTGCCCAATCAGGAATGTTCAAAGGGGAGGAGCTGTTGTGCGCATCCCGGGCAACTGGGGTCATCACGGCAATGCCTTTTTTTCAGGACTGCTTATACTCCGTGCCACAGCCAGCTCTGTTCCTGCTGGATAACTCGTTGGAAGTTTATCTATGGCAGAGCAGCTCGGCTCACACCTCACAGCGCCCCCTCTGGGACACAGAGAGGAAATGTGCCATGGAGACGGCGCTTCAGTACTGCAGAGagaGAAACCCCAGACGGCCTCCTATGGCTTATTTTCTTGAGGAAGGAGCCGAGCCTCTCACTTTCACTAATGTTTTCCCATCCTGGGAGAGACGAGTAACACAGGCGCCCTCAGTGCAGAAGAAGCTAACATTAGTGCAGGATGCATTAGCTCTCCTCAGCGGGACTCAGTACTCTGTGCAGGATCTACTAACAAGACCTTTACCAGACGGGGTGAACCCTCTGCACCTGGAGACCTATCTGTCTGATCATGACTTCCAGGTGGTTTTAGGAATGAAGAGGAAAGACTACAATTCCTTGCCAGAGCTGCAGCAGTTAAACCTGAAAAAGAGCAAAGGCCTGTACTGAAGCTGCATTTGAAAGACTACTGACCCAGAACTACTGAAGCAGTTTAAATTTCTATGTTAAGcagaagacttttttttgtagTCCTTGTTTTTGAAATAATCCTATTTTCTTGTAATGTCACCCCCTTTTTCATGTACAGTTTAAAACCTAATGATtatgtaagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgagtgtgGTCACTTTAGTGCCTTACAGAAATTCATCCACTGATTTTagccaaaagtccagggggctGAGGAGGACTGCCTGCCTACACTCACTCAATGGCTTTCGATTTCCTCTCTCTTATCAGCcaaagctgttttgttttctttctccttcctttCCCTTTCTACACTTTTTCCCATCTTTTCTCATCACTAACCCTTTATTCCAGGCctggggggaaaatgtgaataaaaaaaaacattagttgTTTTACTGCCGTGGAATTAAATCTGGTATCTCTTATCAGCTATAAGAACACAAATAAACTGGAATGAAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244141 lncRNA downstream 169880 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 265641 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 612655 5280730 ~ 5284905 (-) True LOC113528378
TU243538 lncRNA downstream 805638 5089336 ~ 5091922 (-) False G205633
XR_003402949.2 lncRNA upstream 21580 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 256256 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 272094 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 342598 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 714879 6646097 ~ 6647814 (-) False stat5a
XM_034310090.1 mRNA downstream 120335 5757144 ~ 5777225 (-) False znf281a
XM_034310088.1 mRNA downstream 120335 5757144 ~ 5777225 (-) False znf281a
XM_034310087.1 mRNA downstream 120338 5757144 ~ 5777222 (-) False znf281a
XM_034310085.1 mRNA downstream 120338 5757144 ~ 5777222 (-) False znf281a
XM_034310086.1 mRNA downstream 120338 5757144 ~ 5777222 (-) True znf281a
XM_026916974.2 mRNA upstream 2822 5934040 ~ 5938431 (-) True cdk21
XM_034309809.1 mRNA upstream 2822 5934040 ~ 5938414 (-) False cdk21
XM_026916772.2 mRNA upstream 9648 5940866 ~ 5950997 (-) True retsat
XM_026917153.2 mRNA upstream 24528 5955746 ~ 5961050 (-) False LOC113528542
XM_026917240.2 mRNA upstream 31470 5962688 ~ 5978373 (-) True nmt1a
TU244224 other downstream 56083 5841137 ~ 5841477 (-) True G206282
TU244177 other downstream 140827 5754767 ~ 5756733 (-) True G206236
TU243535 other downstream 805638 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 1162674 4722417 ~ 4734886 (-) False mlx
XR_004579400.1 other upstream 9644 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 22515 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 22515 5953733 ~ 5961050 (-) True LOC113528542
TU244626 other upstream 195692 6126910 ~ 6194996 (-) True G206604
trnac-gca_16 other upstream 1339688 7270906 ~ 7270977 (-) True trnac-gca_16

Expression Profile