RNA id: XM_026916325.2


Basic Information

Item Value
RNA id XM_026916325.2
length 3062
RNA type mRNA
GC content 0.47
exon number 2
gene id cavin1a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6773433 ~ 6793535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgagtatgtgtgtttgtttctctctcagtgtctttgCCAGGCTCCGGAAGATCAGGATCTAGCTGGAGATGGTCATTGTGGGTGTGGCCTTACAGTAAATGACAGTGTTAGGAGGAGGAGCGTAGGAGTAGAAGGGGAGCGTTTGACAGGAGGGCTCCACAACAAGCCGTGGCATTTGAGCTCGGTGCTGAGGCAGTCTGCACCCACTGGCTGGCCAACGTCCCGGCACAGATTCGCCTGGAGAGAGTGGGGGTGGAAATGAGTGAGGGATCTTCTGAAAGGTAGAACGTTCTATATTGATGTGTAGAAGAAAGACAGGGCTTGTTGGGGAAAAGGCAGGAGGGGTTTAAAGAAAAGTACAAGTACAAGGATTCACTCTGCTTCCCAGGTGTCTGCTGTCCTTGGGCTTTTTTTAGGGCTTTATTTTTACCACCAGCACTGCATTCCTACACCTCGGCCCAGAGGCTTGCATCTGCTAGCACGCTAGTGTGTTAAGTtcttttgtgggttttttttttgctgtggacATGGCCATGGCCGAGACGAACCTCAAATTGGATCGCGTGGCTCTTTGCGAAATCTCtgacgatgatgatgaggtGGTTTTGGTCACAGCGGCGGCCAAACCTTCAGTAACGACCCCGGCCTCCAACCGCAAACATATAGACGAcgatgacgatgacgatgaaGAAGATGAACCGTCCAAAGAAGTGGACCTGAAGCTGGGACTGGAGAACAGTGACTCCCAGAAATCAGAGGCTCAAGCTACAGGCGTGATGGTCCTGGCTCTCTTGGACAAGATCATCGGCGTTGTGGATAAGATCCAGCAGACGCAGAATGGCCTGGAGTCCCGGCAGGAAAGCATGGAGAAGAACATGTCGAGCATCCAAAGCGAGCTGAACAAGCTAGCCAAGAGCCAGGGTGGCACAGCCGGCACGGTCACCAAGCTCCTGGAGAAGGTGCGCAAGGTGAACGTCAACGTGAAGAGCGTACGGGCCGACCTGGAGAAGCAGGCGGGTCAGATTAAGAAGCTGGAGAACAACGAGCAGGAGCTGCTGAAGAGGAAGAATTTCAAAGTGCTCATCTTCCAGGATAAAGAAAAGCCAGTGAAGACCACTGTGAAGCCCGAGGCAGCAGTAAGTGAGGAGGGTGAACACGTGCTGAGTGAGGGAGAGGAAGCACAAGGCACAGATGAAGTGGTTGAGATCGAGGAAACCGTGGAGGAATCGCGGGTGGCGCGCATCAAGCGCAGTGGCCTGCAACGTGTGGACGAAATTAAGAAGGCCTTCAGCAAGGAGCAGATGGAGAAGACCAAGCAGCGAACCAAAGAGAACCTAGAGAAGACCCGTCAGAGAACcaaggagaacctggagaagacACGCGTGAGGACCCGCGAGAACTTCCAGAAGACCAGGGTGAGCCTTGGGAAGAAGATGGGCAAGCTAGGAACCAAGATCAGGCCCAACAAGGAACGCAAAGAGAAGATTCGTGCGTCTCGTGTCAAGGTGAAGAAGTCGCTCAAATCCGACAACAAAGTCTACGCCCGCTCAAAGATCACCACTTACCGAGTGCCGCCATTCACCTTCTACGTGAAGAAGATCCGCGAGGGTGAGGAGGAGCCAGAGCCTGAAGCCGAGCCTGAAGCCGAGCCTGAGGATGAAGCTGAAGAGCTGCAAATGGAGGACAAGGAGGACGTAGAGGTGAAGGAAGCCGAGCTGGTGAATCTGAGCAGCCCGGAGGAGGTTCTGCTCGAGGCAGCTGAACATTCGCAACTCGTAATCCAGGATTCAGTGCAGCCACGGGAGAAAGCCAGTCAATGAAGCCAAAGCAGGAGCCCCTCGTCTGGAAAAAATATAACCATGTGTGGAAGTCTGGAGCTGAAAATGAAGGCTACATGAATGTATACAGATATGACAGTGAAGAGTAAAACTGATGAATGATGACAAGGCACAAAAGCATGTTGGACTGAAGAACAAACTCATTTACATTAAGCTcttcatatctatctatctatctatctatatataatatatatataactgccTCCAGGCAGTTGTTTCTAATTGCAGTCTTTACACTTTTGAGTTTTAATACACTTGATACAACTCAAGTGTGAATTGTATCAGGTGTACCAGGGAGCTTTCACACCTTTTAGTCTGTTAATCAGAATAAGAGTGAAATTGACACTTGTGCTTCAGTtactgtttggtttggttttgatTTTACAATGCAAATAATTACAGAACCAACAAGCAAAAAAGGGGGTATTGAGGACTGAATACATAtgtgtaaaatgtctttatttattggtcagaaatacaactatggaaaaagataaacaaaccTTTGCCAAGTTCCTGTAGAAATCGGAGCcagcactaaataaatgattattataattatacataaataactagtttaaagcATATTTGAATCCagtgcttattttatttatttatttatttgccgcATGCAACAAGCAACCtcacatttctgcagctctACAGCTCCACCATTTGGCTCAGTTGGTGTCTTGTGGCTCAGTTTAGCGGCTACAAAAAACTGAAACACAACATAAAATACATGGCATTCAACTGAATCAGAGGTGATTTAGAGTCGAATCAGAATTCAGAGTTCACTCGGACTCTCTCGGACTGGTTAATTTGGTCCAATCCGAGTGCTCATGCTAAGTTCTCACCTACACAAACAAAACGTACCAATGGTTCAATCCAACTGGACTAAACattgcatatgtgaaagcaccctacGAGTCTTGCGTCCTTAAAGACTGCAATTAGAAACCGCTGCTCAGGACAGTTGTAATTTGAACCGGGCAGTCCCTAAAGACTTTTACAAGCATTCACAAAAGGATGACATGGATGTCAGGCTTGAGCATCGATTTGGACAGGGATATGTCATCTGAATCGACCAATACAAGGCTGACTAGTGAGAGCTCTACGAATGTCAAGGTTAATATTTGCTCCAAATGTTATATGCATAATTGTAAATCCATTTGTGAATGATTTGTAGCCAAGTTTTAATAttaattctgcttttattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244981 lncRNA downstream 125619 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 427070 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 569237 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 583507 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 819929 5952798 ~ 5953504 (-) True LOC113528476
TU245006 lncRNA upstream 31361 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 32833 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 308713 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 382997 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 433850 7227385 ~ 7227664 (-) True G207221
XM_026916393.2 mRNA downstream 8519 6734117 ~ 6764914 (-) True stat3
XM_034309888.1 mRNA downstream 19831 6734117 ~ 6753602 (-) False stat3
XM_026916395.2 mRNA downstream 47268 6646058 ~ 6726165 (-) True stat5a
XM_026916398.2 mRNA downstream 52439 6646058 ~ 6720994 (-) False stat5a
XM_026916397.2 mRNA downstream 96783 6646058 ~ 6676650 (-) False stat5a
XM_034309886.1 mRNA upstream 819 6794354 ~ 6820369 (-) False atp6v0a1a
XM_034309885.1 mRNA upstream 819 6794354 ~ 6820369 (-) True atp6v0a1a
XM_026916777.2 mRNA upstream 53360 6846895 ~ 6860907 (-) True stk17al
XM_026916996.2 mRNA upstream 95127 6888662 ~ 6890923 (-) True tmem86b
XM_034310127.1 mRNA upstream 105472 6899007 ~ 6916995 (-) True gys1
TU244626 other downstream 578437 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 812383 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 812383 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 822436 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 931956 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 477371 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 478720 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 479522 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 480771 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 525068 7318603 ~ 7321962 (-) True G207231

Expression Profile