Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916326.2 |
| length | 1431 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 9 |
| gene id | rpl3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 3154981 ~ 3159263 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0031017 | exocrine pancreas development | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02925 | RP-L3e, RPL3; large subunit ribosomal protein L3e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU242266 | lncRNA | downstream | 79293 | 3073977 ~ 3075688 (-) | False | si:dkey-283b1.7 |
| TU242256 | lncRNA | downstream | 115329 | 3034246 ~ 3039652 (-) | True | si:dkey-283b1.6 |
| TU242241 | lncRNA | downstream | 121753 | 3028815 ~ 3033228 (-) | True | G204524 |
| TU242232 | lncRNA | downstream | 184112 | 2965883 ~ 2970869 (-) | True | G204518 |
| TU241989 | lncRNA | downstream | 613456 | 2541126 ~ 2541525 (-) | True | G204317 |
| TU242401 | lncRNA | upstream | 11999 | 3171262 ~ 3174277 (-) | True | G204664 |
| TU242842 | lncRNA | upstream | 441739 | 3601002 ~ 3602239 (-) | True | G205038 |
| TU242834 | lncRNA | upstream | 457908 | 3617171 ~ 3620119 (-) | True | G205030 |
| TU242844 | lncRNA | upstream | 471431 | 3630694 ~ 3631383 (-) | True | G205040 |
| TU242874 | lncRNA | upstream | 545020 | 3704283 ~ 3738959 (-) | True | G205063 |
| XM_034310182.1 | mRNA | downstream | 76963 | 3075532 ~ 3078018 (-) | False | si:dkey-283b1.7 |
| XM_026916303.2 | mRNA | downstream | 76971 | 3074264 ~ 3078010 (-) | True | si:dkey-283b1.7 |
| XM_026916306.2 | mRNA | downstream | 82154 | 3066745 ~ 3072827 (-) | True | rpl23 |
| XM_026917006.2 | mRNA | downstream | 91170 | 3059168 ~ 3063811 (-) | True | ccdc103 |
| XM_026916632.2 | mRNA | downstream | 96025 | 3057417 ~ 3058956 (-) | True | LOC113528219 |
| XM_026917079.2 | mRNA | upstream | 23722 | 3182985 ~ 3191017 (-) | True | rusf1 |
| XM_026917078.2 | mRNA | upstream | 23722 | 3182985 ~ 3190970 (-) | False | rusf1 |
| XM_034309806.1 | mRNA | upstream | 40884 | 3200147 ~ 3213935 (-) | False | prr14 |
| XM_026916799.2 | mRNA | upstream | 40884 | 3200147 ~ 3213935 (-) | True | prr14 |
| XM_026916075.2 | mRNA | upstream | 55223 | 3214486 ~ 3218927 (-) | True | cd2bp2 |
| XR_004579338.1 | other | downstream | 554629 | 2599709 ~ 2600352 (-) | True | LOC117598767 |
| XR_004579451.1 | other | downstream | 1147193 | 2003534 ~ 2007788 (-) | False | LOC113527889 |
| XR_004579450.1 | other | downstream | 1147194 | 2003534 ~ 2007787 (-) | False | LOC113527889 |
| XR_003402974.1 | other | downstream | 1655376 | 1499515 ~ 1499605 (-) | True | LOC113528659 |
| XR_003402975.1 | other | downstream | 1655631 | 1499261 ~ 1499350 (-) | True | LOC113528660 |
| XR_004579380.1 | other | upstream | 223568 | 3382831 ~ 3413767 (-) | False | nde1 |
| XR_004579378.1 | other | upstream | 240482 | 3399745 ~ 3413767 (-) | False | nde1 |
| XR_004579379.1 | other | upstream | 240482 | 3399745 ~ 3413767 (-) | False | nde1 |
| TU243007 | other | upstream | 881218 | 4040481 ~ 4044575 (-) | True | G205173 |
| XR_004579349.1 | other | upstream | 933650 | 4092913 ~ 4117643 (-) | False | dcaf7 |
