RNA id: XM_026916333.2


Basic Information

Item Value
RNA id XM_026916333.2
length 5994
RNA type mRNA
GC content 0.49
exon number 32
gene id spag9a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12396504 ~ 12435649 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCGATGGTGTGGTCAGCTGTTGTGAGACGGGATCACGGGAGGAAAAGAAAATTCCACGTAACAGTCCGAACGGCGGTCACTTCCAGGCAGAGACTGAGGAGAGCCTGTGATTTTCGTGTTCCACGCTGACACCCACACAGATATCAGAGAAGCTGGTAGTGGAGTAAGTAATATAGGGCACCATTGTTTTGAGGCAGGAAGGGAAAGAAAATGGAGCTGGAGGACGGAGTGGTGTACCAGGACGACACGGGCACGTCGGCGATCATGTCGGAGCGCGTGTCGGGCCTGGCCAGCTCCATCTACCGCGAGTTCGAGCGCCTCATCGGCAAATACGACGAGGACGTCGTGAAGGAGCTGATGCCGCTCGTGGTGGCCGTGCTCGAGAACCTGGACTCGGTGTTCGCGGAGAACCAGGAGCACGAAGTGGAACTGGAACTGCTCAAAGAGGACAACGAGCAGCTCATCACGCAGTACGAGCGCGAGAAGGCGCTCAGGAAACACGCCGAGGAGAAGTTCATCGAGTTTGAAGACTCCCAGGAGCAGGAGAAGAAGGACCTGCAGAACCATGTGGAGAGGATGAACTCACAATCACGCCAGCTGGAGCTGAAACTCAAGAACTTTGCTGATCAGATAAGCCGTTTGGAGGAGCGGGAGGCCGAACTCAAGAAAGAGTATAATGCTCTCCATCAGCGACACACAGAGATGATTCATAACTACATGGAACATGTAGAGCGCATTAAACTCCAGCAGATAACCGGAGGAGAGGTCTCAGATACAGGAACCCTGGGCAGAGTCAGGAAAGAGCGACCCCTCTCTCTGGGCATCTTCCCCATGTCTGGTGGTGGTGGGAACAACTCTCAGCTCCCAGATTTTCTGGGCCGAGCAGAGACTCCAGGGACGGAGGGCTGGAGATTCACTGAACTCAGTCAGCATCGATCGAATGCCAGTCTTAAGCAGCTGGAGGCGGAGGATCCTCCACAGAAAAGCGAGGGTAATAGTGCACAGGAGGCTTGGGGGAATATGCTGGCAGACGACTGTAAGGATGAGCTGTTGGGCTCCAGTTCTGTCACACCCATGTCCACCACAGCCTCAGAGCCAGGGTTGGACTGTCAGCGGGAGGATGGTGACGGTTCCAGCAGGTGTGCTGAGGTGCAGGCTGCACCGGGGACTCGCTCCATCTCAACGGGTTTGGTGGAGAATGAGGACAAGTCTGATGTGCAAGCTATTATTGAGTCAACCCCAGAGCTCCATCTGGACCTCAGTGGCTACAAAGGCTCCAGCACCCCAACTAAAGGTATAGAGAACAAGGCGTTTAACCGGAACACAGACTCTCTGTTTGAGGAGCTGTCAAGCGCAGGCTCTGGCCTCATTGGGGATGTAGATGAAGGAGCTGATCTACTGGTGGAGTACTCTGATCTGAGTTTGCTTGgaaTGGGCCGAGAAGTGGAGAATCTCATTCTGGAAAACACACAGCTCCTGGAGACAAAAAATGCACTGAATGTGGTAAAGAATGACCTGATCGTCCAAGTGGATGAACTTACGTCCGAGAAAGAGGTTCTTCAGGGAGAGCTGGACACAGTTTTGCAGACGAAGGCCAAACTGGAGGAGAGGAACAAAGAGCTTGAGGAAGAGATCAAGAAAGTTCGGGCTGAGATGGAGAGCAGCAAACTGAATAACAAAGAGGAAGATGAGAGCGACGTGCCCACAGCTCAGAGGCGTCGGTTCACCCGAGTGGAGATGGCACGTGTGCTGATGGAAAGGAACCAGtataaagagaggctgatggAGCTACAGGAGGCGGTCAGGTGGACAGAAATGATCCGAGCTTCCAGGGAAAATCCTGCTCTTACTGAGAAGAAGAAGTCCAGCATCTGGCAATTcttCAGCCGGCTGTTCAGTTCCTCgtcctccagcagcagcagcagcagtgcgGTGAAGCCTCCTCCATCTAATGTCAAGTACAACCCACCCAGCGGCATGAGGAAGAGCAGCACCTTCTCCCAGTTCCCCACTGAGCGTTCCAAAGCCTTTGACTTCCTCAATGATGAaGTGGACATGAGCACGTCTCCATCACGTAGGGAGCAGAAGAAGGCTCAGTACAGGCAGGTCAAAGCCCATGTACAGAAGGAGGACGGGCGGATGGCAGCTCACGGCTGGAGTCTGCCCAGTAAATACAAGGAAGCAAATGGTAGGCAAGCAGAGAATAAGATGAACTTGCCTGTGCCTGTGTACCTGAGGCCACTGACTCAGAAAGATCCTTCCATGAAGCTGTGGTGTGCAGCCGGTGTGAACCTCTCGGGTGGAAAGCCACATGACGCAGGCTcaggtgtgtgtattgatgACTCTGGAGCTGAGGGAGAGATTGCCAGACCGAGGAAAGGCTCTCAGAGCAGCCTGGACCAACAGGAGCAGGAGCACAAGgaGCAGGAACGAGAGGTGGCGCAGGTGGACATGTCCAGCCATGTTTGGATCTGCACCAGCACACAATCCTCCACTAAAGTCATTATCCTGGACATGACACAGCCCTCTGAGCTGCTGGATAGCTTCTACGTCTGCAACTCGCACGTGCTGTGCATCGCCAGCGTGCCAGGTGTCCTGGAGACAGACTATCCTGCTGGAGAAGAAGTTCCTCAGGACTCAGAGGCGAGGCTTGAAGGTTCACTGACGAGCAGTTTGGCCAGTAACAGCTCACATGGCAGTGAGGGAGCTCTGAGTGGCATCTCAGCAGTTGGCTGTACAGCAGAAGGGACAGGATCTGGAGCTCAGACAGGCAGCTCAGGAACCAATGAGCTTCTGGCAGAGCTCAGTCCTGTAAGAGGTAGAGtggAGTTGTCTAGGGAACCTAGTCCCAGTGAAGACGGCGTTCCCACAGCAGAGGAAGCCACTGAGGCtactgaggaagaggaggaggcaCCGGGTACAGAAACCAGCCAGCCTGGCATTTACACTGAGCACGTATTCACAGATCCACTGGGAGCACAGCCCACTGAGAGCTCTACAGCCACAGACGATGTGAGGGAGTCGGGtcaagagagagatggagctgCTTCTCCAAGCAGCGAGCAGGATCAAGTCAGGGAAGAGATCCAGAGGATGAGAAGCACCCTGCCTACCATGTGGTTGGGAGCTCAGAATGGCTGTTTGTATGTGCACTCATCTGTGGCCCGGTGGAGAAAGTGCCTCCATGCAGTGAAGCTGAAGGACTCCATTCTTAATATTGTCCATGTTAAAGGACGAGTGCTTGTGGCTCTAGCCGATGGTACACTAGCCATCTTCCACAGAGGCCAAGATGGCCAGTGGGATTTAACCAACTACCATCTGTTGGACCTGGGCCGGCCGCACCACTCCATCCGCTGTATGTCAGTTGTGCATGATAAAGTGTGGTGTGGCTACAGGAACAAGATCTATATCGTCCATCCCAAAGCTATGAAGATTGAGaaGTCATTTGACGCTCACCCGCGGAAGGAGAGCCAGGTGCGTCAGTTGGCCTGGGTGGGTGATGGAATCTGGGTCTCCATCCGGCTGGACTCCACCCTGCGTCTATTCCATGCACACACTTTCCAGCATCTCCAGGATGTGGACATTGAGCCTTATGTCAGCAAGATGCTGGGCACAGGTAAACTGGGCTTCTCTTTTGTGAGAATCACAGCTCTCATGGTGTCCTGTAAGCGGCTCTGGGTCGGGACAGGAAATGGCGTGATCATCTCTATTCCTCTATCAGAGTCTAATAGGAGTGTTGGTGCGATAGCGAGCCGGCCTGGTGGTGCAGTACGCGTATTCGGGGATGAGAGTGTGGACAGTGGGACGTCAGGCTCCTATGTGCCCTACTGCTCTATGGCCCATGCTCAGCTTTGCTTCCATGGTCACAGAGATGCAGTCAAGTTCTTCGTTGCGGTGCCAGgtcaaGTTGttcctccagcagcagcagcacctgATTACATGACCCCAGACTCAGACTCTCCTTCCTCCAACAGTTCCTCACGAGAGCAGCATCCCAAGTTTATGCTGGTCATGAGTGGAGGAGAGGGTTACATCGACTTCAGGATGGGTGATGAAGATGGAGCAGGAGTAGCTGAGGATGAGGAATCTCTAGAACCCACCCTGCAGCTGCAGTCCGCCGCTCCCACCAAAACCGAGCGCAGCCACATCATAGTCTGGCAGGTTGCCAACAACGACGAGTGAGCAGCCAATCACTGCCTCAGGTTCAACAGAGAACTCCGCCCCTCAAGCCACCCTGTGGCCtgctgttacattttttatcaCAAATTACTAGAATTATGATTCCCATGATTATTATTAGAAGACGTACAGAAACCCATTTCATAAGggttacttttgtttttgtgttttctttgaaGTTTTACTACGTTCTATTTTCATTCACGCCAAGGCATAAAGTCAAAGGGAATCTGAGAAGTAAGGAAAATGAAAGGGAGTAAATGAATCCATCCAGGACTGtaattgtacagttttagtGACTGGGCTTTGTGAATGgccagtccaaaaaaaaaaaaaaagcctagtaCTCCAGTAGAGTACTGAAGCACAGAGACCAGTGAAGGAAACACATACTTTGAGTTTACACCATGACTGCTCATATAATTGCACATATATAAGGGAAGTTCCCATGTTCAAGTCATTTGTTttgtgcaagagagagagagagagagagagagagagaggctacGACTTGTGTGCACTGTGACTGGTGTCGCAGTAGCATCGTGTGATATTTCTAGAGCAACAGAAAGCTATTTTTGCTATCTGCTTGGCATGTGTCCTCTTTGCATTGTCCTAGAACCTTAAAGGCCTAGTCTGTcttgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgaatgaAGCAGTCCAGTGTGTTGTTAAGGCCCTAGCACTAGATTCTGCCTCCTGTGGTAGCACCTGTAGGCTAGAGCTTTCTGGCACTTTAAAATAGTGACCAATGTAATTAGATCTAAACGTAGATCTACACTTATTCTAAAAAGCAacacatgtatttttatttttccaaaaggGGCTAGCCTGTTACCAAAGGAAAAATCGTAGAACAAATGCATAACAGCCTCTAGTTGCTTGCATTCCATGtaggctttttgttttttggacatTCACTACAAAATTTTCATATTGAAGATCAAATTTTTTAAAGGCCTCATTTCTTGACAGGGATTTTATCAGAACCACTTTACATCGCACCTTACCTTGTTTGTTTCCATGAACTAAGCCAGTGGGTTTTGtgcattcatttttgttttgagtGTTTACACATCTGGTCTTCGATGCTGAAACCAGTTTGTTCTTATTCTTATCTGTGtcatttttacagtgtttaactttttttttgtatttgaaggaaataaataacaggcagtctgattttgttttattccagaAAGGGAATATTCATATAGGTATTTTGCCATtccagtatttattttttcataatgaaTTTTGTGGTTCAGAATGTAACTTTATACATGAACATTCTAACAGTTTGTGTAATATCAGGCACTCAAAATGGGTTTATGTGGTGTGTTATTGCAGACATTGTGAAGGAATTGCATTATTACTGGTTGATAAGTGTAACATCATGGATCGGAATATGTAGGATATACAGAATAACCTCTGTGTGGATCATCTGGAATTCAACATTCATTGTACTAAgctatgcatgttttttttaaaaggacacTGCAATGTGTTTGTTCAAATCCCTGATTATTGCCACCTTTTTGGGTGGactagtgtgagtgtgtatgactGATgtagaactgtgtgtgtgtgtgtgtgtgtgggtgggtgcgTATGTGTGGACGGTTGCTTGATCCCTTAGACGACACAGGATGTGCTGTGGTTGTCACAGCTTGTCATTACTGTGGTTTTTCCTGTTCAATGTTTGCTAAAACAGCATCATAGCCTTATTTTTAACAATCTAATAAACTCAATTTCATGGGAATTAACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248698 lncRNA upstream 15518 12378946 ~ 12380986 (+) True G209945
TU248695 lncRNA upstream 18091 12378159 ~ 12378413 (+) True G209944
TU248694 lncRNA upstream 18420 12375907 ~ 12378084 (+) True G209943
TU248692 lncRNA upstream 18997 12375907 ~ 12377507 (+) False G209943
TU248637 lncRNA upstream 22132 12367578 ~ 12374372 (+) True ndufb10
TU248885 lncRNA downstream 110784 12546433 ~ 12548503 (+) True G210086
TU248969 lncRNA downstream 343600 12779249 ~ 12780136 (+) True G210160
TU249018 lncRNA downstream 385427 12821076 ~ 12821284 (+) True G210209
TU249234 lncRNA downstream 609341 13044990 ~ 13045833 (+) True G210384
TU249423 lncRNA downstream 930035 13365684 ~ 13365893 (+) True G210532
XM_026916987.2 mRNA upstream 7069 12385975 ~ 12389435 (+) True kdelr2a
XM_026916838.2 mRNA upstream 26242 12367566 ~ 12370262 (+) False ndufb10
XM_026916814.2 mRNA upstream 39977 12340950 ~ 12356527 (+) True LOC113528323
XM_026916836.2 mRNA upstream 108052 12287220 ~ 12288452 (+) True fahd1
XM_026916827.2 mRNA upstream 124413 12264705 ~ 12272091 (+) False narfl
XM_026916888.2 mRNA downstream 51628 12487277 ~ 12490947 (+) True tob1a
XM_026916033.2 mRNA downstream 180635 12616284 ~ 12661616 (+) True ntn1b
XM_026916965.2 mRNA downstream 259720 12695369 ~ 12775815 (+) True usp43b
XM_026916966.2 mRNA downstream 271703 12707352 ~ 12775815 (+) False usp43b
XM_026916968.2 mRNA downstream 274647 12710296 ~ 12775815 (+) False usp43b
XR_003402925.2 other upstream 207915 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 818681 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 859339 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 1978623 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 1040179 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3377593 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3482568 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3704681 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4651642 17087291 ~ 17109275 (+) False srl