RNA id: XM_026916345.2


Basic Information

Item Value
RNA id XM_026916345.2
length 1613
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113528067
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8887405 ~ 8893797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGAGACACGGGACATCAGGAGAAAGAAAACTTCCTGAAACCAGAGGGGACACATGATCATGGATATCTATTTGTggaaagttgtgtgtgttgtatgtgctCTACTCTTTAATGCTACAGGCTTACTCTCCCAGCTGGATGTGTGTGGTCGGCCTCCACTGAACACCAAGATTGTGGGTGGTGAAGCTGCTGCTCCTGGGTCCTGGCCTTGGCAGGTCAGCATTCAGTCAGGAGGCTTCCATTTCTGTGGTGGCAGCCTGATCAATGAGAACTGGGTCTTATCGGCTGCTCACTGTTTCCAAAGcGTTACTGCACCTGAAATCACAATCTATCTAGGAATGGAAAGTCTGGAGGGAACTAACTCTAATATGCAGAAAACAGGCACTAGTAGCATTATTAATCACGAAGAGTATAACCCTACCACCCATGACAATGATATTGCACTAGTCCAGCTCTCCTCTTCAGTTACTTTCACCAATTATGTCATGCCAGTGTGCCTTGCAGCAAGCAACAGTTCTTTTCCTGGTGGTACTAATGTCTGGGTCACAGGATGGGGTAATATTGCTTCTGACGTGAATCTGCCGTTCCCTAAAACCCTGCAGGAGGTGCAGGTGCCGATTGTCAGTAACAGTGACTGTGCAAAAGCATATGGATCTGGCTCTATCACAGACAATATGATGTGTGCTGGCTTAACTCAAGGAGGAAAAGACTCATGCCAGGGTGATTCTGGAGGTCCACTGGTGGTCAAGATCAGTGGAACATGGGTTCAGGCTGGGATTGTGAGCTTTGGCAATGGTTGCGCTTTACCTAAGATCCCCGGTGTGTACACCAGAGTGTCTCAGTATGAAGACTGGATTAACAGTAGGATCAGCAGCAGTCAACTGGGATTTATTCAATTCTCAAATGGCAATCATGGCTCCCCCAACCTCTTCTGTCTGTTCCTTTCTTCTTCCATCATCCcattcctcctctccctctaCAACTCCTAGTGATATCAGTCAAATTAAACAtacaagcaaaaacaaaaggagTGAGTTAACATTACTATATTATGTCAATGCCTTACACAAGATCCATATTTAGCTTTTATATGTAGCTTTTACTTAAGTACTTAACGGACATATGTCAACTTAATTTTCTacaaaactacattttaaagatgcagtttaactggaaaacaaagacacaaaaCATCACTGATGAGCCTGATCAGAATACATTATGAACCCTTCAGGTTTAGTTAAAGTCATTCTGAATGACATGGGAAAGAGGAAGATCTTTGAATTATGATTTCCTGCACTCCTGGCAACAAATGGCTATTACATCACTGGAAATCAAGCTTGCAATCTCCTGATCTTTGGGTGAACACTTAGTTGAAGTATTTAAaactttcttatttttattgttcaAATCTTTTTTCACCCCATATTGAGGAGTTACAGTTGTTACTTTTCTCAGCCACTCTACTTGAACAATCCAAATAGCCTTATGAAAGCCACTGTAATAGCAATTCATaatgtgaagctttctgtaatcCAAATAGCCTTGCctaatgtaataatattgtaGTGTCATGTTTTAATAAACCTTTGATACAGTAAGTCTGCTCCA

Function

GO: NA

KEGG:

id description
K09628 PRSS27; serine protease 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246318 lncRNA upstream 13113 8851803 ~ 8874292 (+) True G208004
TU246211 lncRNA upstream 81972 8804488 ~ 8805433 (+) True G207932
TU246198 lncRNA upstream 114929 8754701 ~ 8772476 (+) False LOC113528294
TU246433 lncRNA downstream 63463 8957260 ~ 8958068 (+) False asphd1
TU246445 lncRNA downstream 88230 8982027 ~ 8983311 (+) True G208105
TU246490 lncRNA downstream 128378 9022175 ~ 9022947 (+) True G208120
TU246492 lncRNA downstream 133492 9027289 ~ 9027537 (+) True G208122
TU246494 lncRNA downstream 135874 9029671 ~ 9029875 (+) True G208124
XM_034310049.1 mRNA upstream 4420 8876232 ~ 8882985 (+) True LOC113528197
XM_034310186.1 mRNA upstream 13940 8843197 ~ 8873465 (+) True LOC113528198
XM_026917121.2 mRNA upstream 402461 8454003 ~ 8484944 (+) True LOC113528522
XM_026917167.2 mRNA upstream 529254 8311016 ~ 8358151 (+) True ngfra
XM_026916463.2 mRNA upstream 661400 8219525 ~ 8226005 (+) True tmub2
XM_034310187.1 mRNA downstream 8931 8902728 ~ 8904664 (+) True LOC113528196
XM_034310050.1 mRNA downstream 15873 8909670 ~ 8915323 (+) True LOC113528195
XM_034310051.1 mRNA downstream 23151 8916948 ~ 8921493 (+) True LOC117598844
XM_026916737.2 mRNA downstream 56669 8950466 ~ 8958100 (+) False asphd1
XM_026916740.2 mRNA downstream 59148 8952945 ~ 8958100 (+) False asphd1
trnas-cga_1 other upstream 879138 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1033896 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1587721 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1614874 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1771470 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 2821 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 167768 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1050509 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1455605 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1478618 10372415 ~ 10417881 (+) False G208781

Expression Profile