Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309695.1 |
| length | 1224 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | cbx1a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 9490348 ~ 9501580 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| K11585 | CBX1, HP1B, SWI6; chromobox protein 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579419.1 | lncRNA | downstream | 44244 | 9441986 ~ 9446104 (-) | False | LOC117598997 |
| XR_004579418.1 | lncRNA | downstream | 44298 | 9441986 ~ 9446050 (-) | True | LOC117598997 |
| TU246658 | lncRNA | downstream | 366467 | 9122196 ~ 9123881 (-) | False | LOC113527952 |
| TU246570 | lncRNA | downstream | 387222 | 9102911 ~ 9103126 (-) | True | G208189 |
| TU246536 | lncRNA | downstream | 426841 | 9061580 ~ 9063507 (-) | True | G208158 |
| TU246919 | lncRNA | upstream | 228289 | 9729869 ~ 9731447 (-) | False | hoxb8a |
| TU246954 | lncRNA | upstream | 244916 | 9746496 ~ 9748039 (-) | True | G208473 |
| XR_004579453.1 | lncRNA | upstream | 328047 | 9829627 ~ 9844421 (-) | False | LOC117599011 |
| XR_004579454.1 | lncRNA | upstream | 328047 | 9829627 ~ 9843423 (-) | False | LOC117599011 |
| XR_003402943.2 | lncRNA | upstream | 335670 | 9837250 ~ 9838412 (-) | False | LOC113528446 |
| XM_026917026.2 | mRNA | downstream | 15870 | 9464331 ~ 9474478 (-) | False | copz2 |
| XM_026917024.2 | mRNA | downstream | 15870 | 9464331 ~ 9474478 (-) | True | copz2 |
| XM_026916595.1 | mRNA | downstream | 75319 | 9414691 ~ 9415029 (-) | False | prr15la |
| XM_034310057.1 | mRNA | downstream | 77738 | 9401685 ~ 9412610 (-) | True | LOC113528600 |
| XM_026917248.2 | mRNA | downstream | 81687 | 9401685 ~ 9408661 (-) | False | LOC113528600 |
| XM_026916891.2 | mRNA | upstream | 152863 | 9654443 ~ 9658406 (-) | True | hoxb1a |
| XM_026916890.2 | mRNA | upstream | 152863 | 9654443 ~ 9656978 (-) | False | hoxb1a |
| XM_026917239.2 | mRNA | upstream | 168029 | 9669609 ~ 9673077 (-) | True | hoxb2a |
| XM_026916403.1 | mRNA | upstream | 174182 | 9675762 ~ 9722637 (-) | False | hoxb3a |
| XM_026916406.2 | mRNA | upstream | 174182 | 9675762 ~ 9710305 (-) | False | hoxb3a |
| XR_004579423.1 | other | downstream | 15870 | 9466480 ~ 9474478 (-) | False | copz2 |
| TU246802 | other | downstream | 70764 | 9409804 ~ 9419584 (-) | False | prr15la |
| TU246803 | other | downstream | 70764 | 9409804 ~ 9419584 (-) | False | prr15la |
| TU246806 | other | downstream | 70764 | 9409804 ~ 9419584 (-) | False | prr15la |
| TU246804 | other | downstream | 70764 | 9413601 ~ 9419584 (-) | True | prr15la |
| XR_004579397.1 | other | upstream | 229262 | 9730842 ~ 9731250 (-) | False | hoxb8a |
| trnac-gca_22 | other | upstream | 883469 | 10385049 ~ 10385120 (-) | True | trnac-gca_22 |
| XR_003402902.2 | other | upstream | 949916 | 10451496 ~ 10470518 (-) | False | tecpr1b |
| XR_003402978.2 | other | upstream | 1930930 | 11432510 ~ 11432628 (-) | True | LOC113528663 |
| XR_003402963.1 | other | upstream | 2034980 | 11536560 ~ 11536678 (-) | True | LOC113528647 |
