RNA id: XM_026916349.2


Basic Information

Item Value
RNA id XM_026916349.2
length 5751
RNA type mRNA
GC content 0.41
exon number 11
gene id prkar1aa
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3672980 ~ 3683323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGACGTGTTTCCGGTTTGAGGCATCCATCCAAGCGAGGACCGAGAAGAGAGAACGGGAGTGTCActgtttattaaagtaaaaaaaaaacaaaacaaaacaaatcaaaacaacaacaacaccgaGGAACTCTCTACTGACAACTCAGGTCATCATGGCATCCGGCAGCTCGAGCAGCGAGGAGGAGAGGAGCCTGCGGGAGTGTGAGCTCTACGTGCAGAAGCACAACATCCAGCAGCTGCTGAAGGACTGCATCGTGCAGCTGTGCACGTCCAGGCCCGAGCGTCCCATGGCCTTCCTCCGGGACTACTTCGAGAGGCTTGAGAAGGAGGAGGCCAAACAGATGCTCAGCCAGCAGAAATCCGGTTCTCGCTCTGATTCCCGAGAGGACGAGATTTCTCCTCCCATGAACCCGGTGGTGAAAGGTCGCCGTCGCCGCGGCGCCATCAGCGCAGAGGTTTACACCGAGGAGGACGCCGCATCCTACGTTAGAAAAGTTATTCCGAAAGACTACAAAACAATGGCTGCTCTTGCTAAAGCGATCGAGAAGAACGTGCTGTTCTCTCACCTCGATGACAACGAAAGAAGTGATATATTTGATGCCATGTTTCCCGTGAACTACATCGCCGGAGAGACTGTCATTCAGCAAGgtgACGAGGGCGATAACTTCTACGTTATTGATCAGGGTGAAATGGATGTGTATGTGAACAACACGTGGGTGACGAGTATCGGAGAAGGCGGCAGTTTCGGCGAGTTGGCGCTGATTTACGGCACTCCGAGAGCTGCGACCGTTCGAGCCAAAACCAACGTCAAACTGTGGGGCATCGACAGAGACAGCTACAGGAGAATACTCatgGGGAGCActctgaggaagaggaagatgtATGAGGAATTCCTGAGCAAGGTGTCCATTTTGGAATCTCTGGATAAATGGGAGAGGTTAACGGTGGCTGATGCTCTGGAGACGGTGCAGTTCGAGGACGGGCAGAAGATCGTCGTCCAAGGCCAACCCGGAGACGAGTTCTTCATCATCCTCGAGGGATCGGCAGCGGTGCTTCAGAGACGCTCCGAGAATGAAGAGTTTGTAGAAGTGGGCAGACTCGGATCTTCTGATTACTTCGgtgagaTTGCGCTGCTGATGAACCGTCCTCGCGCCGCCACCGTGGTCGCGCGCAGTCCTCTGAAGTGTGTGAAGCTCGACCGTCCTCGGTTTGAGCGTGTGCTCGGACCCTGCTCCGACATCCTGAAGAGGAACATCCAGCAGTACAACAGCttcgtctctctctccgtttgaatctctctctctctttctctctctcctttcacCTCCTCTGTTTATCGCAGGGTCCAGCTACGCTTTATTTTCTTACTTCTCCTGTGTACGTTTCGTTCGTGcttgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtaggtttAACCTCACATTCTCGAATGTAGAGATGTAAAATGAAGCCGCTGAAACAGGAAATCGACCAGAAACTGCTCTCCTTAACAGTTATTCTCTTCATGTAAATGTgactatttatttttgcagcgtTTAGGACGTCACGAGTCCTGAGGCGAGGCTGCTCGGTACATCCAtccacttattttatttattttaattttttttcctcttcgtTCAGCCGTTCAAACTGTTTCAGAGTATTTAGGATCTGGCTATAGTTACAACAAGATcactttaatttttcacatttttatagtACTGCTCCTTCATGTGTTTTCCACATActtgtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgttgtagcttAATCTGATATTCTCAAACAAAAAGCTGAAATAggtcaaatatttaaaaaagagagaattctCTTCCTTACAGTTGACTTACCTTAACTCCTTTATACATacaatagatttattttattatttattatttcttttatcgTTACTCGATCCTGgcgttccatccagggtgtattcccgttTCGAacccagtattcccgggatgGACTCTGGATCAAccgtgatcctgaccaggataactGCTCTGGTTACTTTTTTGTAGTCTTTGGTCCAAAAGGTAACTTCTCTAACAAAGAATTTGATGACAACCAAGTATAATTTACAAAAAGTAACACATTAAAAAGTCCAGTATCTATCAAATTGAAACCTACAAGAAGTTACAATAAacgaaaataattaaaaataattaaacagagCAAGTCTGATTATCCATATCAGGATAAATGGGGTGGAAGGACAGAACCTTCAGGAGAAATtattcaaggttttttttttttttgttttgtttttttaattgtgaggtcaaatattaaaatatttgagaTTTCAGCaaaaatttgtttcattttttttgtttaatcataATTAAACCAAGTCCACCTTACTGTCTtaattttctgtgtattttcttttctaatctTGAGTTTTGGGCTTTCGTAAAGATCAGGAATcacagatttctctctctctttcaattACATGATGATTTAGAAGTGTTCAGAACGTGACGAATCCCGAGACGAGCTGTGAACTGATTGTTCTTAAGTTTGCGCcctttacagtgtttacagttcaTTTTGGATTATAGTGACGCCAAaggcgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagatttgttggttctgttttttctctcgaTGGTACTGAAGTTGAATCATTTAAACTgtgcgtgcttgtgtgtgtgcttgtgtgtgtgcttgtgtgtgtgcgtgtgtgtgtgtgtactgtagcGATCCGCTTTGCTCCTTACTGTTCTTTATTGCACATATATAGCAGACGTAAATGATAGTAAATCACCATAACTGTATTTTTTGCACACTTTGGTATATACTGAAATTGAAATATTAAGATtctctatatataaatatatgtggcgcttattttgcattattattggtcctgttgtttttgttttgtttttctttatttttattgctctACTCTCCCTTCACACCTATCGTTTAACTGTATATCCAAAACCGCACCatgttcactacatagtgcactgtTTTTCTAAATCCAGCACACTCACGAAATCCCAGAATGCCCTGCAGTAGGTTAAAGTCCAAACAGTCGACCATAGGCGTATGCAGGGTGGCATATGTAGTGAATAATATCtctggtttgggacacgtccacagcGGACTAGTGGTGAGGTGGTCATGATGTTTGTGTTGCCTGTGTAGTAAATAGCGTGTATATTGGGACGCGTCCACGGTACACTGATGATGGTCTGACGTATTTTAGTGAATAaggtgtggtttgggacacatccataGTAGACTAATGATGAGGAATCGTTAGTGATGGTGGTTATGAGGCCTCattagtgaatagggtgtgtggtttgggacacatccattGTAGACTGATCAGGGGGAGGAGTTTGTGGTGTCTATGAAGCCTGTATAGTAAATAGGGtctggtttgggacacgtccacagaAGACTGATGTCGGTTAGACATTTTTAGATGGTGGTTGTGAggcctcatttattaaatagtgtgggtttgggacacgtccacagtggaCTAGTGAGGGGGATTAGTGTAGTCACTGTAGTGAATAGAGTGTTGTTTTGGACAGCGCCATTTTAGATGTCTCattagtgaatagggtgtggtttgggacacttTAAATCTTCTCTGTTTTTACCTCACAGTTCTTCTGTTCTTCACAGCAATGTTTCATTTAGGTATTGTGTGTTAGTCGTAGTCACACATTTCATGAGTAAGTGCTTTGGATTAACGGAGTGAGGCATCGCTGAGTGAACGTTAGCACACGTGCAGTACTGTGTTGTTCTTTTTAAGGTCCCTGTAACATAATTGTGTTTTGATTATAAACACTGTGGAACACAAAGTGAAATCGTAGGTACCGTTAACAACAGAGTAGCTTTTACCTAGTCAGGTCTAtggtcatttcattttataacatGTTTAAAGTAGCAGTATGCaacttttttccctaaaagtgAAATAAGTAGCATTTTGTCTGAGTAGAGGAAAGTACTCGAAAACGTGGCATTCTTTCAAGTTGGTCTAAAAGTcctaaaatatatttgaaataaattgtaCACCACTTTGGGAACAACACCAGATTCCCAATAGTTACATACTGCAACTTTAATAAAGAATGTTTGTATAGCAAACATGTTTGTATAGTATTAAACAGGACAGTGAATTACGGTTTTTCCAAACGTCGTACTGTATTTCTCAACACTGACTGaagaaactgaagctgaaaacgtgtgtgtaagtgtgtgtgagtgagagatgCAAACCCCTATAAGAGTCTCTTTACACTCATGTTGGATAATTTTAGAGTGTGGAAGTGCctgatttcttcattttcaaAAGTTCCTTTTGCTTGGGCATCGCTTTCGATAAACGCAcatctatcagtctgtctgtctgagcaTAGGAATCAATCTCATATCGCAAAAATCGCCTCACGTCTTATCACAGGTTTACAGCACGAAATGTTCTTGTTCGtccagtcatcttcagtaaactcTTTATCGCGATCAGAGACACTTTGGTTTAAATCATTTGTTTGAATTGTACAAAAGAGAATAAGGAACGTTCGTTAGAAAATATTGCGAAAGGGTGGGATTGTTCGACGTTTCTGCAGGGGCGGGATTAAAATGCAGTCTTGTCCACACCTCTACCTGGCAGCTACGTTGTATAATCCTAccttcacactagcaagcgacatTTCAGGTGCAGTTTTCTTAAGTctgtacaaaatacaaaacgTAGCTATGATATGGTAAAGCTACAAATTCAGATGATTGGGTCAGatgatttttaaacaaaattggTGCATATAAATCATAAATGGGCCACAACGAGACAAACTAGCATTTGCTAGCGTGAACATAGAATATTTCTGGTCACCGGAAGAGAAGAGTTCCTTGAAAGCAGTAAAAACATGATGGACAAAATTAATAATGTAACAATACAACGTAAAGATATCGTAAACTGTGCTAAACAGTGAAGTGATTACtgtgatgtgaaaatgaaatattggcACTGTGTATTAATGaaacaatgctttttttttttcccttttttttcttatggcAATGACTTTAGTGTcataccatgttttttttttttaatagcataaTACTGACTGAACATCCTTTTTCCTACATGTTTATAAATTACGCAGAAGCTTGTGAAAGAAGCAGATGTGATTTTCTTACGTTGTTCCCTCACGTTGATTTCTGCAGTATTTGATTTTTAGGAAACGGCTCTTGCGTGTTTGTGATACGTTTATAGTTTAGAGTTAAATGATTTTCTGTGCTAACTCAGTGGCTGCTCATTGCGTAGTGCTGCAACGACACgctgtttatttctgattataAAGAAACGTTCACGCTTCCCTCTGTAAGCGGCCATATTGGTCCCTTTTCCCCCCAGAATCCACTTCCTCTTGTGTATTAGTCATTCCCATGTATTCTTTTCAGAGCTATAGTATGGATAAAAAGCTGATATTATGTGATCATGGCTGACGTGTCCATCTGCGCTGCTCTTTAGCTTTGCTGAGGAccattttctcttctgtttctgtgatgtatacagattttttttttcttcttttttcttccctttttatCGTGCTGATGTTGTAACCCTTTTTTGGTATCGATCATCCCAATGGCAGGCcaagcaataaaaaaattcttaaacatg

Function

GO:

id name namespace
GO:0001932 regulation of protein phosphorylation biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242844 lncRNA downstream 41597 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 52861 3617171 ~ 3620119 (-) True G205030
TU242842 lncRNA downstream 70741 3601002 ~ 3602239 (-) True G205038
TU242401 lncRNA downstream 498703 3171262 ~ 3174277 (-) True G204664
TU242266 lncRNA downstream 597292 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242874 lncRNA upstream 20960 3704283 ~ 3738959 (-) True G205063
TU242898 lncRNA upstream 85532 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA upstream 85532 3768855 ~ 3776450 (-) False kcnc3a
TU242970 lncRNA upstream 265526 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 265526 3948849 ~ 3957710 (-) True G205145
XM_026916575.2 mRNA downstream 3678 3658456 ~ 3669302 (-) True rac3a
XM_034310233.1 mRNA downstream 15693 3641953 ~ 3657287 (-) False gps1
XM_034310232.1 mRNA downstream 15693 3641953 ~ 3657287 (-) False gps1
XM_034310231.1 mRNA downstream 19398 3641541 ~ 3653582 (-) True gps1
XM_034310234.1 mRNA downstream 19400 3641541 ~ 3653580 (-) False gps1
XM_026916909.2 mRNA upstream 73662 3756985 ~ 3760988 (-) True LOC113528389
XM_034309836.1 mRNA upstream 90260 3773583 ~ 3865700 (-) False kcnc3a
XM_034309833.1 mRNA upstream 93573 3776896 ~ 3865706 (-) True kcnc3a
XM_034309835.1 mRNA upstream 93573 3776896 ~ 3865705 (-) False kcnc3a
XM_026916273.2 mRNA upstream 93573 3776896 ~ 3865704 (-) False kcnc3a
XR_004579380.1 other downstream 259213 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 259213 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 259213 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 516271 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 517550 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 357158 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 409590 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 1039094 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 1044771 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1406013 5089336 ~ 5091922 (-) False G205633

Expression Profile