RNA id: XM_026916363.2


Basic Information

Item Value
RNA id XM_026916363.2
length 5619
RNA type mRNA
GC content 0.51
exon number 34
gene id mapk8ip3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7334913 ~ 7376030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGACTCTCTCAGCACCCGGAGAGAGCGAATGGGAAGCGGCATCACCGCCCCACGTTAAAAAACACCGCACCGACTGTGGATGCCAAAAGCCGACTTGTGCCGCTATGCTTTATAGACACTACACCCGGGCGTCGAGCAGCGGCCAGGTGACATCCGcctgtatgtatatgtaaacgGGCTAGCTATTtaccctttatttatttatttagctccttattattatttttctcctccATTGATTTTGTCGGCGCAGTAATGGCCGCGCAGAGGCAGGTGCAGCGTCGCGGATGTTTGTGCGCGTGATGTGACGGATTCCGCCCGCGCGCTGGGATGGGATGGGACACACCGAACCGAGGCCCGATCTTTCCGGTGACACGTCTGATGAGGCTTTACATCGAGGCGTAGGGGTGAGGTTTTAATAGCGCCGGCTGAGGGCCTCCTCTCGCATAGCGGCACACGGACTAAACAAACAATCCGCGCGGCCGAGATTCTCCCCGTGACACTGCGGCGCATCCTGATGCTTTTCACATCCCATCATGGAGCAGTGTGGCAGCGCGTGCACCTGATGACGCCCCTGTAAATGAACCCCAGTCCCTCCTCCCAAAATAATAACGTCTGGATGTAAAAAGAATCGCACTCGCACTCTTTCTGAATCACACGCgcgtttgtttatttatttatttatctgattcCCCTGCgttacaaaacaaacaaacaaacaaaaaacacagtaacATCGCCAAGATGATGGAGCTGCCGCTGGACGAGGTCGTCTACCAGGACGACTACGGCTCCGTGTCCGTGATGTCGGAGCGCGTGTCCGGCCTGGCCAACAGCATCTACCGCGAGTTCGAGCGCCTCATTCGCAGCTACGACGAGGAGGTGGTGAAGGAGCTCATGCCGCTCGTGGTGAACGTGTTGGAGAACCTGGACGCCGTGCTCACGGAGAACCAGGAGCATGAGGTGGAGCTCGAGCTGCTCAAGGAGGACAACGAGCAGCTCATCACGCAGTACGAGCGGGAGAAGGCGCTGCGCAAGCAGGCCGAGGAGAAGTTTATCGAGTTTGAGGATGCGTTGGAGGCAGAAAAGAAGGATCTCCAGGCCCAAGTGGACTTTTTAGAATTACAGGGAAAACAGTTGGAACTGAAGACCAAGAACTACGCAGATCAGATCTCCCGTTTGGAAGAACGTGAGTCAGAGATGAAGAAAGAGTACAACGCTCTTCATCAGCGACACACAGAAATGATTCAGACCTATGTTGAACACATTGAACGCTCCAAAATTCAACAGGCTGGAGGCAACCAGTCAGATACCACAGGCTGCGGAAgaacTCAACGCAACACCTGGAGGAAAAGTAAAGCGGAGCGACCTCCTTCGTTGAGTCTCTTTCCCACTGGGGATGCTATGGAGGACGGCTCAGAGTCCGACTCAGTTGTGGCCACGCCCAGCAGCACAGGCAGCAAATCAAACACTCCCACCTCATCTGTTCCCTCGGCAACAGTTACCCCTCTGAATGAGGCGGTGGTTCCCTCTGGAGAGTTTGACATGTGCCGGGGGCGGAGCCGCAAAAACGCCAAGAGGCTCAGCAGGAATATGGAAGTGCAGGTCTCACAGGAGACCAGGAATGTCAGCATcgGTATGGGAAGCAGTGATGAGTGGTCTGAGTTTCAGGAAATCATAGACTCTACTCCAGAGTTAGATATGTGCATGGACCCTCGTATCTATGGCGGAGGAAACAGtccatctcagggcataGTGAACGAGGCATTTGGCATCAACACAGACTCGCTGTACCACGAGATCAAAGACGCAAAATCTGACATCATTGGTGATGTGGATGCCGGAGCAGAGCTGCTCGGGGAATTCTCAGTGCGGGATGATTTCTTTGGGATGGGGAAAGAGGTGGAGAACCTTCTCACAGAGAACAAACAACTACTGGAGACCAaGAATGCTCTGAACATTGTGAAGAACGACCTGATCGCGAAAGTGGATGAGCTGTCGGGAGAGCAGGAGGTCTTGAGGGAGGAGCTGGAGGCAGTTAAACAGTCCAAGAACAAAGTGGACAGCAGAGTCAAAGACCTGGAGGAGGAGCTGAAGAGGCTGAGAGCTGAGGCACTCGGAGCATCTCAGGACTCAAAGGATGAAGGAGGAGAGGATTATTCGTCCTCACTGCAGGATGATGTGGCCATGGCGCAGAGGCGCAGGTTCACACGGGTCGAGATGGCGCGTGTCCTGATGGAACGCAACCAGTACAAAGAGAGACTGATGGAGCTGCAGGAGGCCGTCCGCTGGACTGAGATGATCAGAGCCTCTAGAGAGAATCCTCAAATCCAGGAGAAGAAGAAATCAACCATCTGGCAGTTCTTCGCACGTCTCTTCAGCTCATCCTCAAGCCCTCCTCCAGTGAAGCGGCCATACACCAGTGTCAACATCCACTATAGATCCCCCTCTCCTGGCTTCAACCAGAGACGCTCACAGACCATGTGCCAGATCTCCACTTCCAACCgcacacttgagttcttccctGAGGAACTGCCCAGTAATGGTGTTGCGTCTCTCCTTAGCGACTCGGCGCTCTCAGTCCGTAGGGAGCAGCGGCGTGAGCAGTACCGGCAGGTCCGTGAGCACATGCGCCGGGACGATGGCCTCATGCAGGCCTGTGGCTGGAGTGTGCCACCCCGATTTAAACAGACGGGTTCCCAGGCAGACAGCGCTCAGGACGCCGCAGGAAAGAGGCCGCAGGCCAATGAGAAAGAGGACAACCGCATGAAAAACGTCCCCGTGCCTGTATACTGCCGCCCTCTGGTGGAGAAGGATCCCAACAGGAAgCTGTGGTGTGCTGCTGGAGTGGACTTGACTGGCTGGAGGACACCCAGTCAAGAGGCGGGAGTGAAGCTACCAGCCAATGGCACTGATCCTCTGACTGGAGAGGACGAGGAAGGAGAGAATAAGAGCGAACACAGCTCACCGGAGAAGAAGAAGcctAAGGAGCTACATGAGACAGACTCCATGAGTAGCCGTGTGTGGATCCTGACCAGCACTCATTCAGCCAGTAAGGTGGTCATTATCGATGCCAATCAGCCCGGGTCACTGGTTGACCagtttaatgtgtgtaatgccCACGTGCTCTGCATCTCCAGTGTTCCAGcGGCCAGCGAGAGCGATTACCCTGCAGGTGAGATATTTCTGGAGCAGCAGGGTGATGGTGGTTCAGAGGATACTGGTAGAGTGGAGGGAATGCTGGCAGGCATCACACTGGTGGGGTGTGCAACCAACTGCAGCGTCGTGCGTAGTAACTGCTCCTCACGCACCGACACCCCAGTGCTGGACAAAGGACAAGcacctGCAGCTCCAGTGTGTAGCCGGCTGGCAGTGTCTCAGTCAGCAGAGGAAGCCACTGAAGCCATGGAAGTGTCAGAGGAGGCGGGGCCAGCTGAGGAGGGCGGTAGCTCCGCCTCTTCTGGAACATTCACTGAACATGTCTTTACAGATAAttcacacagTGAGGGTGGGGGCACTAAGGAGGAAGTGACATCAGCACCTGCAGACTCAGAAAACGGAGGAGATGAACGTGCTGGAACCAGTGCCGCACCCACCATGTGGCTCGGTGCCCAGAATGGCTGGCTGTATGTGCATTCTGCAGTGGCAAACTGGAAGAAGTGCCTCCACTCCATCAAACTCAAAGACTCTGTACTCAGTCTAGTGCATGTTAAAGGAAGGGTGTTGGTGGCACTGGCAGATGGAACTCTTGCCATTTTCCACAGAGCTGAAGACGGTCAGTGGGATCTGTCGAACTATCATCTGATGGACCTGGGTCGCCCTCACCACTCCATTCGCTGTATGGCTGTGGTGCATGACAAGGTCTGGTGTGGCTACAAGAACAAAATCCATGTAATCCAGCCAAAGAGCATGCAGATTGAGAAATCATTTGACGCTCACCCTCGCAGGGAGAGCCAGGTCAGGCAGCTTGCCTGGATCGGAGACGGCGTATGGGTGTCCATCCGTTTGGACTCCACACTGCGATTGTACCATGCGCTCACACACCAGCACCTTCAGGATGTGGACATCGAGCCCTATGTCAGCAAGATGCTTGgtacaGGGAAGTTGGGCTTCTCATTTGTTCGGATAACAGCTCTGCTGATTGGAGGAAACCGATTGTGGGTAGGAACAGGAAATGGAGTCATCATCTCCATCCCTCTGACCGAGACTATAGTCCTACATCGGGGACAACTTCTTGGCCTGAGGGCAAACAAGGTGTCTCCCACATCATCAGGAGGTGTGATCCATGTATATGCTGATGACAGCAACTCAGACAAAGGCAATGGTAGCTTCATCCCATACTGCTCCATGGCCCAGGCTCAGCTGTGCTTCCATGGGCACCGGGATGCAGTCAAATTTTTCGTGTCAGTGCCAGgcaaCGTGCTGGCCACCCTAAATGGCAGTGTCCTGGATAGTCCATCAGAGTCTCAGGGTTCTTCAGCCCCAGCGGAGACAGAAGCTCAGAGTGTTCAGAACGTGTTGGTCCTCAGTGGAGGGGAGGGCTACATTGATTTCCGCATAGGTGATGGTGAGGATGATGAAACTGAGGAGGCAGATGGCGAAGCCCCTCAGATTAAACCAACATTGTCTAAAGCTGAGAGGAGCCATATTATTGTTTGGCAGGTGTCCTATGTCCCCGAGTAATGCTATCAGACACTTTATGCCTGCATTCCCCATCTTGTAACTTTGGCCCCAAATATTCTCTATGAAACCTTGTGTATTCCTAACAATGCCCCTTAAATTCTGTATGTAAGCTCTGTAACTACCCCCTAAGGCCTGTATTTACCATCCCTAAATTGTAACTATCCCCTGTATGTTGGCTGATTTGCCCCTGTGACTGCCCTTTACTCCAATGCGAACAGCTCAAGACTCTTCTACATCTTACAGCTGAACGGCAATTATAAATGCATTCGATACAACTACCTTTCTCAGAATAACTCAGTTTTTGCCAAATGTATAAACATGCTCTTGCTCTATTCTTACTTGTCCACCAGCTCACAGCTCACTGGATAGTTGCTTTTATTCCAGGTGGAATAAGGATAGGGAGCTGTGATTGGTTAAAAGGGTTTGCAGAGCTCTTTGGTTTGTATGATCCTTATTTAGGAATTTGTTTATATGATGTAATAAGGAGGATGGTGGGGAAGGGATGTGTACAAAGGTGTAAATATTGAGGCTCGGTACATACAACATAGTGTCATTTTAGGGGAGTAATTGAAAGTGTGATAACTGATGGCTCAGGAATTGAAATGACAATAAGATAAGAAAGCACATTTGAAGGAGACctgtttcaaatatttaaaatgtcactgaTATGGCAGATAAagtcaataaatacaaaattgtttAAACACCACCCTAAATTAACATACAGAAAGTAAGACATATCCATCAGGTAAGCTGTGAGCTGGCTTTATCTTCAAAGTAGACTGGGTTTTGTGGGACACACACAAGTTCTATGATTGGCTACTGGTTTGACTGACAGTTGAAAGGACCGATCTGATCGTCTGTATGTAACAATATATGTTCTCTTATGTgtggttaaatattaaatattaaacatattcgTGCTCTGAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245440 lncRNA downstream 21258 7312082 ~ 7313655 (-) True G207254
TU245380 lncRNA downstream 72800 7255625 ~ 7262113 (-) True G207205
TU245403 lncRNA downstream 94006 7240241 ~ 7240907 (-) True G207227
TU245401 lncRNA downstream 97032 7237673 ~ 7237881 (-) True G207226
TU245396 lncRNA downstream 107249 7227385 ~ 7227664 (-) True G207221
TU245640 lncRNA upstream 183737 7559767 ~ 7564972 (-) True crhr1
TU245771 lncRNA upstream 567648 7943678 ~ 7948171 (-) True G207540
TU245797 lncRNA upstream 653176 8029206 ~ 8029449 (-) True G207565
TU245805 lncRNA upstream 657252 8033282 ~ 8036848 (-) True G207571
TU245906 lncRNA upstream 734628 8110658 ~ 8114574 (-) True G207653
XM_026916930.2 mRNA downstream 109685 7217582 ~ 7225228 (-) True rpl19
XM_034309697.1 mRNA downstream 188001 7135337 ~ 7146912 (-) False LOC113528017
XM_026917136.2 mRNA upstream 5566 7381596 ~ 7388394 (-) True jpt2
XM_026916177.2 mRNA upstream 43667 7419697 ~ 7423186 (-) True tmem11
XM_026916176.2 mRNA upstream 43667 7419697 ~ 7422602 (-) False tmem11
XM_026916016.2 mRNA upstream 49687 7425717 ~ 7431112 (-) True natd1
XM_026916017.2 mRNA upstream 49687 7425717 ~ 7431099 (-) False natd1
TU245410 other downstream 12951 7318603 ~ 7321962 (-) True G207231
trnac-gca_20 other downstream 60536 7274306 ~ 7274377 (-) True trnac-gca_20
trnac-gca_19 other downstream 61785 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_17 other downstream 62587 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_16 other downstream 63936 7270906 ~ 7270977 (-) True trnac-gca_16
TU245460 other upstream 49700 7425730 ~ 7431072 (-) False natd1
TU245462 other upstream 49700 7425730 ~ 7431072 (-) False natd1
TU245466 other upstream 49700 7425730 ~ 7431072 (-) False natd1
XR_003402917.2 other upstream 873855 8249885 ~ 8267638 (-) False slc4a1a
XR_003402976.1 other upstream 908444 8284474 ~ 8284592 (-) True LOC113528661

Expression Profile