RNA id: XM_034309722.1


Basic Information

Item Value
RNA id XM_034309722.1
length 1994
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC113528076
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1078439 ~ 1110138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catccatccgtccgtcTATCCATCCGTccgtctatctgtctgtctgtctggctctTGGCTGCCATGTTGGCTCGGGCGCTCCTGAAGACGTCACTCCTGCTGTGGCTGGTGCAGCACACCTTACAAGGAGGAGTCGGACGTCAAGCTGGAGTGCTGGGGAGACTGGCCCCAGGACGAGGTGCTGGTCTCGGTGGTGCTGGTCCTGCTGGAAAgcctggagTTGCTGGTGTTCCTGGGAGCCGTGGCTATGCAGGAGGAAAGCCTGGAAAAGCCACATCTGGGCGTTATCTTGGAGGATTAATATACTTGTCCAGAGCAGGACCGAAACAAGGATACGGAGCTGGTCTGGGAGGATACGGTGCCACCCCTAGAGGAGTGGGACTGGGACTCGGGAATGGCCTGGGAGCGAGAGgataCACTAATGGCTACAGATATCAGCCAGgttatgGTGCTGGTGTTTATCCTGGTGCTGCACATGGTGCTGCAGGAGGAGGCACACCTACAGGAAGCGGCACTAAAGCCTCCAAAccggGATATGGTGCAGTACAAGGGCCACATCCTGGACAAGAGTTTACAAGCAACGGATTGGGGCCAGGATTGGTCAGGCCCAATGGACAGGGCACAAAGCCGTCTAAAGCTGgtaatGGGGTTGGAGGAGGATGGCCCATTGTACAGGGACAGAAAGGCAATGGAATTGGTCCAACCCCAGGAGTACCAACCGGACACGGTGCTCTGAGTAACGggttcggtcctggagcaggagcaggacgCAATGGGAAGGGAGTTAAAGGAAATGGTTACGGCCCACGGCCAGTCTCTAATGGAGTGTCTAATGGAATGTCTAAGGGACGTAATGGAGTACCTAATGGAGATTTAAGTAACGGAGGAGCAGCATCCCGTGGAAATGGTGCCAAAACGACTAAACCTGGAGGGTACGGCCTCGGCCCCAGTGTGTATCCTGGAGCAGGGCTGGCTAACGGCTACGGAGTGGGTCTTGGCCCAGGCTCTTACCCGCAAACTGGTCGAGTGGGCAAACAGGCTGGCTTCGGCAGTGTATATGGCATTAATGGATATGGCGATGGCTATGGAGCTGgTTTGGGAGCTGGAGGTTATGGAGTTCCAGGACTGGGACTGACCACTGGTCTGGGAGCTGGACTTGGAGCTGGACTTGGAGCTGGACTTGGAGCTGGACTTGGAGCTGGACTAACCTCCGAGGCCAAGACTGCGAAATACGgTGGCGCTGGTCCAGGTGCAGTGATCGGCACTGCTGCAGGTCAGCCCGTGGTTTCTGCTGGTCTCGGCACTGCAGGCAAAACAGGAGGTTATGATGGAGCTCCTTACATGGGACAGCCAGGTGGCCTCGGAGCTGACGCTCGCCTTGGTCCTGGTGGAATCCTGGAACCTGTGACAGACTTAGGAGCCGGTCAGCTTCCCTACAACGGAGCACCGCTCATTCCGGCCGGACTGGACGgtgATAATGGCTATCCGTATGAAACACAGCAGCTCAGTCTAGGAGGCAACGGAGGTTATGGAGCAGCTCTTGGGGCCGGAGGTCAAGGTCCATACGGAGTTGCAGGAAAAGACGGCAAGTATGGCGCGGCTGGTTACTACGGTAACGGCATCAAAGGCTGATTTCCGGGCCTCTGTGGTGTGACCAGTGtgatgttttttcttgttttttttttcttttgtccctCTTTGTGTTCTTCATTGATGTGCACGTTTGTCACGTTTctgtgagttttgtgtgtgttgaattGGTGCTTTTTGTCGATGTCTCCtactgtctctgtgtgtccGTGCAGTGATTGTGATGtgttctgagtttttttttttaattttttttattttaatttttaaatttttattttttttgggcCGAAGGTTTTGTCTCACGCCCTTTCCTTGTCTCTGTATCTGACTAAAAACTCTTGAGCACTACTTCtggttgttatttttaattcttattaaCACTAAAAGTGtctcctcactca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579335.1 lncRNA upstream 13 1061190 ~ 1078426 (+) True LOC117598762
TU240787 lncRNA upstream 17918 1058679 ~ 1060521 (+) True G203327
TU240833 lncRNA upstream 194073 817391 ~ 884366 (+) True G203357
TU240820 lncRNA upstream 272094 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 272584 805200 ~ 805855 (+) False setd1a
TU240861 lncRNA downstream 391 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 199259 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 252245 1362383 ~ 1441015 (+) True G203647
TU241222 lncRNA downstream 336851 1446989 ~ 1500793 (+) True G203660
TU241224 lncRNA downstream 412088 1522226 ~ 1533045 (+) True G203662
XM_034309708.1 mRNA upstream 22105 1034336 ~ 1056334 (+) False armc5
XM_034309707.1 mRNA upstream 22105 1046811 ~ 1056334 (+) True armc5
XM_026916384.2 mRNA upstream 35989 1037151 ~ 1042450 (+) False LOC113528077
XM_026916385.2 mRNA upstream 35989 1037151 ~ 1042450 (+) False LOC113528077
XM_034309736.1 mRNA upstream 35989 1037151 ~ 1042450 (+) False LOC113528077
XM_026916889.2 mRNA downstream 110356 1220494 ~ 1237202 (+) True paqr4a
XM_026916593.2 mRNA downstream 143389 1253527 ~ 1266121 (+) True coro1a
XM_034310224.1 mRNA downstream 213962 1324100 ~ 1345037 (+) True ppp1caa
XM_034310288.1 mRNA downstream 243191 1353329 ~ 1361460 (+) True kmt5c
XM_034309989.1 mRNA downstream 291670 1401808 ~ 1494018 (+) True shank1
TU240783 other upstream 27300 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 320381 753275 ~ 758058 (+) False fus
TU240780 other upstream 345585 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 367996 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 401600 672224 ~ 676839 (+) False thoc6
TU240880 other downstream 110374 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 243196 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 451456 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 772937 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 1045461 2155599 ~ 2155849 (+) True LOC117598829

Expression Profile