RNA id: XM_026916384.2


Basic Information

Item Value
RNA id XM_026916384.2
length 1754
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC113528077
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1037151 ~ 1042450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCATCCGCTTAATGTAGCACATGTGACCCCGCCCACCAAGTGTAACCACGCCCCCTTCTGCTGCAGCAGCGAGGTAGCGAGATGTTTTAGCTGAAAGTTAACCGGTTTAGGGTAGAAATGACCTCTAAAGACCTGACGGCTGCGAGATGGGCGGCGGTGGCGGCGGGACGGCTCGTGATGGACGCGATGCAGTCGGACTGGGAGCCTCTGTCTCACTGCGAGCTGGAGCAGCGTCTGGACCAGGCCGTGGAGGAAATCCTGGAGGCGGAGCTGATGTCCGGCGTGCAGGGACACGGGCAGGGACACGGGCAGGGACACGGGCAGGGACACGGGCAGGGACACGGGCAGGGACACGGACAGGGacagagcgagtgtgtgttcacacagCTGTCTCAGCAGGACGAGACGATCCCACACACGGCAGCACACACTGTGACCTCTGACGCGTCCCCTTCAGCAGCCTCGTTCCTCCGTCAGGCAGAGGGAGAACCCGCTTCACAGAACCTCCAGCACGTCTCTGAGGTAGAGGAGAACCCCGCAGTGCAGtacatCACGTCTCTTCTGCAGAAGCTGAAGTGGAGTCATAGTCAGAGGCGTTTGACGGGGAGAGCTCGCTTGTCCTTGTCCCACACGGTGTTCCTGTCTCTCACCCTGCTCTCCACTCGTCTCAGCTACCGCGCCGTGTCCTCCACCTTCCGCCTGGAGAAAGGGAACATCCACCgcatcttcttctccttctgccaCAGAGTCATCACGCTGCAGGATCAGATCATCCGCTGGCCCACCGGTCAGGAGGCGTCGGATCTCCTGCTCCACTTCTCCAGCTGGCTGGGTTGGGATGAGAAGCTCGAGCAGAAGGGTCTCCCTAAAGTGTTGGGCGTGTTGGGCCACACCCGTATCCCGATCCGGCTTCCCGCCAGCAAACAGGACACGGAGAGCGAAGTTCCTCACGCCAAGCGGCTCAGGAAGCGGCGTCACCCGGACTCGTGGCTGAACCTGGAGCTGGCGTGCGACGCCGAGGGTCGTTTCATCCACTGCAGCGTCAGCCGAGGTTCTCAGAGGAACCGAGGTGGTGTTCTGAGTCAGAGATTAGCGCAGCAGCTGGAGCTCCTGCCTCCCGGAACCTGCCTGCTAGCCGGAGCGGGATATCCCCTCACGCAGCACATCCTCACGCCGTTCCATCCCGCACGCAACCCGCAGGAGAACCTCTACAACAGAGCGGTGGAGACGCACCTGAGGAGGCTGGAGCAGGCCGTGGCCGACCTGAAGGAGCGCTTCGGAAGACTGCGCTATCTGGACATGGGGAAGTGCGAGAGGGCCGAAGCCGTGGTGCTGACCTGCTGCATCCTGCACAACGCGCTGCTCCACGCCGGCTACGTCACCAAGGGGCAGGTGGAGAAAGACGCCAGgacagatgaagaggaagaggaggaggagaaggagggaaCGAAAGAGGAAGCTGGAGTTAAACTGAGAGAAACAGTCGCTAATCTGCTGTACAGCGCTCTGGAGTCGGGGACGGAGTAACCTGAGAGACGTGAGCGAAAGCACTCAACCTTTATGATCGTTaaaatatgaaggaaaaaatatCATCTCTCGATACTTGAAGTCATTTCTGATGCACAGTGAGCATCAGTTCCTTTTAatcttacatttaaaaaaaactgagttgatgatacttttattttatgtaatgtctacaaaaataaaaatgacttaaaaccaaaaaggaaaaaaaaccttaataaTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240833 lncRNA upstream 152785 817391 ~ 884366 (+) True G203357
TU240820 lncRNA upstream 230806 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 231296 805200 ~ 805855 (+) False setd1a
TU240807 lncRNA upstream 263127 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 293411 741832 ~ 743740 (+) True G203339
TU240787 lncRNA downstream 16229 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 18740 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 68079 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 266947 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 319933 1362383 ~ 1441015 (+) True G203647
XM_034309762.1 mRNA upstream 2936 1021926 ~ 1034215 (+) True elob
XM_034309756.1 mRNA upstream 22406 1000089 ~ 1014745 (+) True arl6ip1
XM_034310159.1 mRNA upstream 39466 941020 ~ 997685 (+) True smg1
XM_034309735.1 mRNA upstream 125241 889261 ~ 911910 (+) True syt17
XM_026915992.2 mRNA upstream 154509 865213 ~ 882642 (+) True LOC113527857
XM_034309707.1 mRNA downstream 4361 1046811 ~ 1056334 (+) True armc5
XM_034309722.1 mRNA downstream 35989 1078439 ~ 1110138 (+) True LOC113528076
XM_034309725.1 mRNA downstream 35989 1078439 ~ 1110138 (+) False LOC113528076
XM_034309724.1 mRNA downstream 35989 1078439 ~ 1110138 (+) False LOC113528076
XM_034309723.1 mRNA downstream 35989 1078439 ~ 1110138 (+) False LOC113528076
TU240808 other upstream 279093 753275 ~ 758058 (+) False fus
TU240780 other upstream 304297 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 326708 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 360312 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 509531 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 4355 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 178062 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 310884 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 519144 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 840625 1883075 ~ 1885478 (+) False ccndx

Expression Profile