RNA id: XM_026916393.2


Basic Information

Item Value
RNA id XM_026916393.2
length 4149
RNA type mRNA
GC content 0.47
exon number 24
gene id stat3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6734117 ~ 6764914 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGAGTTGGGACGGTACAGCCCCTTACAGACAGACCGCTACAGACTaatgttactgctgctgctgtaaagTTAACAGAACTCGGGTGTCGTTTAGTTGTTCCGTCTGTTCGTAaggctctctctcacacacacacacaaatatcaggTTTGAATACGTTTTTTTTGACGGAAGTGTCCACGGAGGAGTCGCTGCACTTTAACGAGTTTTTTTCCTGCACCTTTTTTCAAGCCACATCCATAGAGGgTCAGCATGGCCCAGTGGAACCAGTTGCAGCAGTTGGAGACACGCTACCTGGAGCAGCTGTACCATCTGTACAGTGACAGCTTCCCTATGGAGCTCCGCCAGTTTCTTGCTCCCTGGATCGAGAGTCAGGACTGGGCGTATGCAGCCAATAAGGAGTCTCACGCCACGCTGGTGTTTCATAACCTGCTGGGAGAGATCGACCAGCAGTACAGCCGCTTCCTGCAGGAGAACAACGTCCTTTACCAGCACAACCTGCGGCGCATCAAACAGCACCTGCAGAGCAAGTACCTGGAGAAGCCCATGGAGATCGCTCGCATCGTCGCACGCTGTCTGTGGGAGGAGCAGAGACTGCTGCAGACCGCCACCACTGCTCAGCaaGATGGCCAGGCCGCTCAGCACAGCGGGACAGTGGTGACGGAGAAACAGCAGCTCCTGGAGCACAGACTGCAGGACATCAGGAAGAAAGTGCAGGATATGGAGCAAAAAATGAAGATGCTGGAGAACCTACAGGATGACTTTGATTTCAACTACAAGACTCTGAAGAGTGCAGGAGAGCTGTCCCAGGACCTGAATGGAAACAGCCAGGCTGCAGCCACCAGACAGAAGATGGCCCAGCTGGAGCAGATGCTGAGCGCCTTGGATCAGCTCAGGAGgCAAATCGTGACTGACATGGCAGGGCTGCTGCAGGCTATGGACTTTGTGCAGAAGAATCTGACTGATGAGGAGCTAGCTGATTGGAAGAGGAGACAGCAGATTGCCTGCATCGGAGGACCTCCCAACATTTGCCTGGACCGGCTAGAGACATGGATCACATCATTGGCTGAGTCTCAGCTACAGATCAGGCAGCAGATAAAGAAACTGGAGGAGCTCCAGCAGAAAGTGTCATATAAAGGAGACCCCATAGTTCAGCACCGCCCTGCCCTGGAGGAGAAGATTGTAGACCTCTTCCGCAATCTCATGAAGAGTGCGTTTGTGGTCGAGAGACAGCCGTGTATGCCGATGCACCCCGACAGACCTCTGGTCATAAAGACAGGAGTTCAGTTCACCAACAAAGTTCGGTTACTGGTGAAATTCCCGGAACTGAATTATCAGCTGAAAATCAAAGTTTGCATCGACAAGGAATCTGGAGATGTTGCAGCCATTCGAGGGTCACGCAAGTTCAACATCCTGGGCACTAACACCAAGGTGATGAACATGGAGGAGTCCAACAATGGCAGCCTGTCAGCTGAGTTCAAACACCTGACTCTGCGAGAACAGAGGTGTGGCAATGGTGGCCGGACCAACAGTGATGCCTCTCTGATCGTCACTGAGGAGCTTCATCTCATCACCTTTGAGACTGAGGTGTACCACCAGGGCCTCAAAATCGACCTTGAGACACACTCTCTTCCTGTTGTAGTCATTTCTAATATCTGCCAGATGCCCAATGCCTGGGCTTCCATTCTGTGGTACAACATGCTGACTAACCATCCCAAGaATGTAAATTTCTTCACAAAACCTCCTGTGGGTACATGGGATCAGGTGGCTGAAGTTCTGAGCTGGCAGTTTTCCTCCACAACCAAGAGAGGCCTGACTATTGAGCAGCTCACCACACTGGCTGAGAAACTGCTTGGTCCTTGTGTGAACTACTCCGGTTGTCAGATCACTTGGGCCAAGTTTTGCAAAgaGAACATGGCAGGAAAAGGGTTCTCATTCTGGGTTTGGTTGGATAACATCATTGACCTGGTAAAGAAGTACATTCTGGCTCTGTGGAATGAGGGgtaTATCATGGGTTTCATCAGTAAGGAGCGAGAGAGGGCCATCTTGAGCCCAAAGCCTCCTGGGACATTTCTGCTGCGTTTCAGCGAGAGCAGTAAGGAGGGTGGCATCACATTCACCTGGGTGGAAAAAGACATCAGTGgtaaGACACAGATCCAGTCAGTGGAACCATACACTAAGCAGCAGCTCAACAGCATGTCCTTTGCCGAAATCATCATGGGCTATAAGATCATGGACGCCACAAACATCCTGGTGTCTCCGCTCGTCTACCTTTTCCCCGACATCCCTAAAGAGGAGGCCTTTGGGAAGTACTGCAGGCCAGAAGCCCAGCCTGATGCAGATATCCAGGATTTATCCGGATGTGtcacTCAGCCATACCTGAAGACCAAGTTCATCTGCGTCACCCCGTGTCCTTCCATCTTCATGGACCTTCCGGACAGTGAACTACTGGCTAACGGCTTCCCTGGGACTAACTCGGGTAACACAAGCGACCTGTTCCCCATGTCTCCTCGCACTCTCGATTCTCTGATGCACAATGAAGCTGAGGCCAACCCGGGACCTCtcgAATCCCTCACTCTGGACATGGACATGAACACGGACGTGGCCTCGCCCATGTGAGACAGGCTCACGCATACGAGCCGAGCCGCATTTAGCCTTTCACTTCTAGCTGTTTCtgctgtgtggagagagagagagagagacatcctGCGTTCTCTTTACATATCGCTCTCAAATAGGTGCTACTCTTTGCACTGTTAACTCTTTTCACTAGACCTTGTACTCATCGTGTGTTCCTCTGAACTCTCCTAACACTTTTAAACGTTTCTTAACTTGGATTGCTGGATTGTTTAAGCGAATCCTTATTAACAAACcatattgattgtttttttttgttgttgttgttgttgttgtttttttatggaTGGAGTGGTTACCAtccaaagagaaataaagaaagtaagATGGCTCAAGAGTTAGTAACAGCTTTGTACTGATTGTATGTGCCATTTTGTTGATATTGCAGAATAAGAAAAtctgtagttttgttttttttgttttgttttaggatCGTAACCTATGGATTCCCGTTTTATATAATACTTGTTTTTATGTACTCTTTTAGAATTATCTAAGAAAGTGTATTATGTTCACATTGGCTTTgtgcaatgattttttttttgtttgtttgtttcatgtaAGCTAACGCTTTATGTGTCATGGGAAAAGAGGCCCCTTGAGCTAATTGTATTATATTCTCTATACGTTTCCCCTCCTGTTTGTCCGTTCTCTATATGTATGGTATTCACCTTGTCTCACAAGCTTTCatgcctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcatatATGAGACACAAATGGACGTGGGTCCTAGCAGTGTCCAGCATACAGTGGGTAAGTTCAGACTCAGCCTTAAGTCTGATTTGTTTAGATCCTTGTTACTCAGGGTGTTACTCACGAACCCATATTTGTTTGGCGGTCAGTACTTACAGTACAATACGATAGTTATGTGTTAACAGAAGCATTTTGTTCCCTCCATATGGACTTATTTAACCAGCAGACCAGGAAGATTGGGAGGCGGGAGAACTCGATCACGCCATTTCAATAGCCGTTAAATGTCATTCCTTTTGAGTTAACCCcatcttgtttttttgcatgatgAAAAGAAAGTGTTATTACATGCTATTAGCATTTACACCAGTAAAGGAAAGATACACCATGGAAAGAAAGCATGCTGACCATGACACAAGATGAAGATATTCTCCATCTTTACCTTTGCAGTAATTAttttcagtgaaatattttgCGCTTCTCATTGATGTCCTTGTTTGAACATGCATCTATACCAGTGTCTGGATGAGGACTGTATAATCATGTCTTTGTTATTGCCTTCGTTATTGTTCTTatctcctatttttttttttttaatttaaatatgctTAACTGTTGGCCTTCCTCACTAATTTTATCTGACACTGCCCAGTGCATGCACCACCCAGTGCATGGTAGTTCTTGTGTTGTAAATTTCTGCCTGTGAGCTCTCTGTACAGTGGCTGCatcacttttaattaaaaaagaatcaaCAACCTA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0001736 establishment of planar polarity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0061026 cardiac muscle tissue regeneration biological_process
GO:0060252 positive regulation of glial cell proliferation biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04692 STAT3; signal transducer and activator of transcription 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244981 lncRNA downstream 86303 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 387754 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 529921 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 544191 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 780613 5952798 ~ 5953504 (-) True LOC113528476
TU245006 lncRNA upstream 59982 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 61454 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 337334 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 411618 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 462471 7227385 ~ 7227664 (-) True G207221
XM_026916395.2 mRNA downstream 7952 6646058 ~ 6726165 (-) True stat5a
XM_026916398.2 mRNA downstream 13123 6646058 ~ 6720994 (-) False stat5a
XM_026916397.2 mRNA downstream 57467 6646058 ~ 6676650 (-) False stat5a
XM_026916533.2 mRNA downstream 101772 6557138 ~ 6632345 (-) True si:ch211-210g13.5
XM_026917049.2 mRNA downstream 178233 6550541 ~ 6555884 (-) True hcrt
XM_026916325.2 mRNA upstream 8519 6773433 ~ 6793535 (-) True cavin1a
XM_034309886.1 mRNA upstream 29440 6794354 ~ 6820369 (-) False atp6v0a1a
XM_034309885.1 mRNA upstream 29440 6794354 ~ 6820369 (-) True atp6v0a1a
XM_026916777.2 mRNA upstream 81981 6846895 ~ 6860907 (-) True stk17al
XM_026916996.2 mRNA upstream 123748 6888662 ~ 6890923 (-) True tmem86b
TU244626 other downstream 539121 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 773067 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 773067 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 783120 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 892640 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 505992 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 507341 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 508143 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 509392 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 553689 7318603 ~ 7321962 (-) True G207231

Expression Profile