RNA id: XM_026916417.2


Basic Information

Item Value
RNA id XM_026916417.2
length 3420
RNA type mRNA
GC content 0.48
exon number 3
gene id hoxb3a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9675762 ~ 9722637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acattatttcatttgtgtttttgtattccAGTATTCGAAACTACAATATTCAACACAAAAAACCCtcaaatttcaaataaaacccCTTAAACAGTCCGTTCAGTAACTGGGAAAACCGCTGGCCTGAAATAATCTACAAAATCCACACGAATATAACGAGATATTACCCTAGAAATGTTTGGTATACAAAAACTAGTgttgttaggaaaaaaaaaactttttctttcttatcttCAACCCACGTATTAGTTAATTACTAATCTTTTGAGTGGATCCCTGTCAAACATTTAGTGGTAGTTGCAAAGTTGGGAACAATGCAGTTAACGAAAAGAGTTGCAGACACCTACATTTTTGCCTCCTGCCTTCCTCCCACATCGTTGCTGATGTTCTCTATTCAAGTACCTATTTGCAAATCACCTTTTAACAattgactgtttacagctgtcgGCGAGTGGTAGAAGTCATAAATCTTAGCCATGGGGGTGTccgtaataataaaaatacgaacagagagagagagagagagagagagagagagagattttaaaacatgttttgtttccattttgCTCTCCTATTTTTCTCcatcatttttttgtatattatcCCCTGTTGATTTACTAAAAGAATCTTCCAAGTCCCACTTAGGGTATTGAAATGAGTCAAACAGGACTGGTGCATTTTTAAAGTGTGCTCCTTAGACGAGTTATAATTGTGTGATCAGGACTCGTCGGTGCggttaaatacataaaaaaaaattcatctagCATCTATTTGGATGCTTTGTTTTCATACTCCTCCCTCGCCTACAAGTCCGCCTGCTGTCTGTTCTCTTGTTCTCCGACCCCCTCCCAACCTGTTTTCATATTTTGCGCATAAGTTGTACAAGTTGGTTGTGTTGGAAAATATATAGTACAACACAGTCAGAATTCGGTTTCTGTCCAAATCTAACAGAAGACCAACACTGCAAAAGCTCCTTCTTGTTATTTATTATGCACCGATGGATTAAGTAAGGGGaaacaaattactttttttctcatgtcctttttctttttatattgcCTAACTACACATGAGCATAGCCTGACACCTCAACTAGTAAGAAGTGGGATGAAAAGAGGTGGATTTCCGCTTGTAGGTCCTCCTGTCCTACTCGCCTGCAATTAGCATAATTTTTCACTGGTGACGCTGTTTGATGGGGATTAACGCTCGCGCCTGGCACATTCAAAGCCACCCCCGTTATTTCCAAACAGCCGGAGAGGCCTGTGATGACAATACAATAACCCACCAAATGGGGAGTAAATGGCGAAAATAACACTCACAAATGCCAGCACCCGAAAATCAACGGGGAAATGTGGCGGCGGGGAGTCGAGAGCCCCGTTCGGATTATGATGTTCGGGTTTGCACGgtgagtgagaggagagagggtAAAGGAAGCGAAATCTGAGGCCATTGTTATCAGCGAGCAGGGCGTACCAGTCGACAGGGCGGCCAGGAGCAGCGCTGCCTGTCCATTTGCCGTTCTCCTCGCATACCTCAGATCTTTCATGCTTAAACCGTCTTCCCCCTTAAGCCAGTCGAGGGGATCAAACCAGGAGCGCCCGCACTGTGGCGCGGGCCAGCCGTGCTCGCCATAGCCGCCGTATGACACTCGCTTACTGGCTGAAATATCGAAACGAGGACGAGCTTTcggctttctttttctttgattGCAGACTGACCGAATGTGAAAAAACATGGTGCCTGCTCGAACGTCGCTCGTCAGAGGCTAAGGTCAGCTTCCAAGAGGCCGTTGGAAAAAGACCGTCACGTGACATCGGGTGCCAATGTTCTTCCAGAAGGTCGTCAGGACCCTGGTAGCCGGTAACGCGAATTTTGGAAATGCAGAAAACCACCTACTACGACAACTCGACACTATTCGGAGGTTATTCGTATCAGGGGGCCAATGGCTTCAGTTATGAGGCCCAGCCTGCGGCTTTCCCGAGCTCGGCACACCTCGATGGCGATTACCAGAGGTCTGCCTGCTCACTGCAGTCGCTAGGCACCAGCGCGCCCACACAATCACAGCACGCCAAGACGAAAGAGCTCAATGGCAGCTGTATGCGTCCCAGTCTACCATCTGAACACCACCAACCTCCCCAGGTTTCTCCTCCTCAAAATCCTGTGAACCCAACTGGATCTAGTGCCCCCCAGCAGCCGGGTGGTAGCGGCAGTGGTGGGGCTGGCGGCGGAGGTACCACCAAATCCTCCACCAAGTCGTCCACACTCACCCAGAACCCGACCATCTCCAAGCAGATCTTCCCCTGGATGAAAGAGTCACGTCAGAACACCAAGCAAAAAAACAGCTCCCCCAGCGCAAGCTCGGCTAATGCGGAGAGCAGTGGCGGCGAGAAAAGCCCTCCGGGTTCCGCGGCTTCCAAGAGAGCGCGCACAGCCTACACGAGCGCACAGCTTGTGGAACTTGAGAAGGAGTTCCATTTCAATCGGTACCTGTGTCGGCCTCGACGCGTAGAGATGGCCAATCTTCTCAACCTTAGCGAAAGGCAGATCAAGATCTGGTTCCAAAACCGGCGCATGAAGTACAAGAAGGATCAAAAGTCGAAAGGCATGGGCTCGTCCTCAGGGGGGCCATCCCCAACCGGAAGCCCACCCCTGCCAATGCAGTCCACAGCCGGTTTTATGAACTCCATGCACTCAATGGGCAGCTATGACGCGCCGTCGCCGCCATCTTTCAACAAGCCTCATCAAAACGCGTATGCCATGTCATCATCCTATCAAAATTCCATGAAAGGTTGTCCCTCGCAACAGAAGTATGGCAACACAGGACCAGAATATGACCCACATGGGCTACAGGGTAGCAGTGGCAACTATGGGACCCCTAACATGCAGGGTAGCCCCGTGTACGTAGGAGGGAACTATGTGGATGCCATGCCGGCCACTGGGCCCTCTATGTACAGCCTCAACCACCTGCCACACCACCAATCTGCCAGCATGGACTACAACGGTGCCACACAGATGTCGGCTAACCAGCACCACGGACCGTGCGATACACACCCGACATACACAGATCTGTCAGCGCACCATCCTTCTCAGGGTAGAATTCAAGAAGCACCCAAGTTGACACATCTGTAACAGGtttgggaaaaacaaaacaaaacaaaacagaagttaaaatagaagaagaaaacaaacaagcaagcaaacaggAACCCAGGGGACGATGCAATGGGGTTGAAAAAGATGATCCAGTGGTTTCTTGCCGTTTCAGTCACAGCAGTTGGTGTTGATGTTGTCCTTTCATTCGCCTGTGAgcacattcatttgttcagAAGACATCTTACAATCAGTTCTGTATGCATAGCCCTGAAAGCCCTACTAAAAACAAAGATTATGAGTAGTGGGTAAGTGTGGATAGTGTAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09303 HOX_3; homeobox protein HoxA/B/D3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246838 lncRNA downstream 170012 9494623 ~ 9505750 (-) True G208391
XR_004579419.1 lncRNA downstream 229658 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA downstream 229712 9441986 ~ 9446050 (-) True LOC117598997
TU246658 lncRNA downstream 551881 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 572636 9102911 ~ 9103126 (-) True G208189
TU246919 lncRNA upstream 47416 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 64043 9746496 ~ 9748039 (-) True G208473
XR_004579453.1 lncRNA upstream 147174 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA upstream 147174 9829627 ~ 9843423 (-) False LOC117599011
XR_003402943.2 lncRNA upstream 154797 9837250 ~ 9838412 (-) False LOC113528446
XM_026917239.2 mRNA downstream 2685 9669609 ~ 9673077 (-) True hoxb2a
XM_026916891.2 mRNA downstream 17356 9654443 ~ 9658406 (-) True hoxb1a
XM_026916890.2 mRNA downstream 18784 9654443 ~ 9656978 (-) False hoxb1a
XM_034309695.1 mRNA downstream 174182 9490348 ~ 9501580 (-) True cbx1a
XM_026916419.2 mRNA upstream 15578 9698031 ~ 9702424 (-) True hoxb4a
XM_026916418.2 mRNA upstream 28686 9711139 ~ 9713742 (-) True hoxb5a
XM_026916420.2 mRNA upstream 32557 9715010 ~ 9717469 (-) True hoxb6a
XM_026916032.2 mRNA upstream 41908 9724361 ~ 9728854 (-) True hoxb7a
XM_026916728.2 mRNA upstream 47398 9729851 ~ 9732566 (-) False hoxb8a
XR_004579423.1 other downstream 201284 9466480 ~ 9474478 (-) False copz2
TU246802 other downstream 256178 9409804 ~ 9419584 (-) False prr15la
XR_004579397.1 other upstream 48389 9730842 ~ 9731250 (-) False hoxb8a
trnac-gca_22 other upstream 702596 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 769043 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1750057 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1854107 11536560 ~ 11536678 (-) True LOC113528647

Expression Profile