RNA id: XM_026916419.2


Basic Information

Item Value
RNA id XM_026916419.2
length 3470
RNA type mRNA
GC content 0.42
exon number 2
gene id hoxb4a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9698031 ~ 9702424 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatttattttgcgaGGTTTTCCCCCTGTGAGACATCAGAGACTAGGAGCGTTGTTTCTCATTAACTGTACCACTGAAGAGTAAAGTCTTGTTTAGCTTTTCTGTCGTATTAGCATTGTTTGTAAAGAAGGGCCAATCCATTCCTTTAGATCAATGATACAATAAAGGCAGATTACTCCAGGTGTAACACCTTGACATGGAGGAGGAGCTGTCAAGGTGAGTAACTCCATTCGATATCTGTCGAGAGGACACCTGTCATCTATATATACCCTGTAGATCCGGATTTGTGtgaacagacacacagtcacaaaTTCGTATCTAGGGGAGTATGTAGTTGATATATAGACCGCAATGCAACATCAACGGAAAAAGAAGACATCAATATATAACtttaggatttttttcccttttttaattaaaataatacaggTCTGTCCGCAAAAGGACGTCATCAACGAAAATTTTAGCTTCAGTTGTACATAGCTTTAGTGTTATTTGAAACAAATTTCAGTTTCCTGGAGTTAAATACCAGTGATTATCTCGCTAGCATTTTCCTAGAATCGTAAGAATCAAGGCAAAAGGCAAAGTACAAGCAATGTTAACGGTTAATGGTCAATTATGCTTGGGGTGTAAATCAAAATGCAGAATAAACGCGCTCTTTGTATGGGGAATGACTGCAGAGTGTGCTTAAATGCAGAAGACCTTAGTTTTGATTTAGGAGGCTTTGTAACCTGAATtagttgatgaattttctatcgATCCTAAACAAGCCCAGATTTATCTCTGACACGCAGATCACGCCACCTCCATTCTATCACCATTATTAGCAAGTGCATTTAAGAGCTTCGTCAGAGAGAGCGGTTTGCCCTTTCACATGGTATCGCTTTTCATGAGTACTGGCCAAAAATAAAGGAGTATTCAAGTTCAGAACATCTGAACCACATTTTGGAGAGGAGTATGTATGTTCTCATTAGACTGAGGTACTCAAGACGAAAGAGAGGGGGAGTCGCTTAGTCTCGGAGGTCTGTGCTTGTGTAAAAGTCCAGGGTGGCTTTATCGGCATGACAGTTTCCGCTAATGAGTGCTTTGTTTCAActaccagtttttttttaaactcaaaacAACGCATTAAAATATGAAACGTGGTTATACTGTCCCAAACTGTGCGCTGATATTGAACACAATCTAAACTGCTTTTTCTCGTTTCCTAATCCGGGAATTGGAAGGATGCACGCCATTGGCTACTGCTGTCACGTGGACTCTTAACTTTGTTCACTTGACAGAAAGTAGGAGGGTTTTACGAAACAGGAAAACGAGTAAAGGGATAGATATAAATTTTAGTATATTTTGTGTGCAATTCAAAGAAATTAATGGCCATGAGTTCCTATTTGATCAACTCCAACTATGTGGACCCCAAGTTTCCACCGTGCGAGGAGTACTCCCAAAGCGACTATCTACCCAGTCACTCTCCGGACTACTATAGCGCCCAGAGGCAAGAGCCATCGTTCCAGCATGAGTCGATCTACCATCAGCGGTCGGGCTGCGCCGATCCACCCTACTCGTCGTGCCAGGGTCCAGGGCAGCCCGCTGTGGTGATGTCTCCTCGGGGTCACGCACTAAACCCAGCTGCACTCTCGACCCCTCTCCCAGAACCAAGCCACCACTGCGACTCGGTAACTCCGAGCCCTCCGCCTGCTTGCGGTCAGACCCCCATTAACCAAAGCACTCCATCGGCCACTTCTCGAAAGGATCCCGTGGTGTACCCCTGGATGAAAAAAGTCCACGTAAATATCGTGAGCCCGAACTATTCGGGGGGAGAACCCAAGCGCTCACGCACAGCTTACACGCGACAGCAAGTTCTTGAGCTGGAGAAAGAGTTCCACTACAACCGCTATCTTACTCGCCGGCGCAGGGTGGAAATCGCCCACACCCTTTGCCTCTCCGAACGACAGATAAAGATCTGGTTTCAAAACCGGCGTATGAAGTGGAAGAAAGACCATAAGCTGCCCAACACGAAGATCCGCTCCAGCAACTCGGCCAGCTCGAGTTTAAACGGCGGCCCCTTGTGCAGTACTCAGAACCGTGCTAGCGGACCACCACAGACTCTATAGCTTGCTTGCGCTCTTCAGAAAGACGCACATTTTAAGACCTCAGTTTTAGGAGTGAGGCTCTAGAAATTGTCAACCCTCTCATCGCTTGTAAACGACATGGATATAACACGAGGTGGGGGAATAATAAGGTGCACagggaaaaatattttaaacacaaatgggGTGAAGACTCGAACTCAAACACTTCTACATTTGTGCTCACTCCCAGTTCAGTTCTGTCCTGTGCCCTTCTTGGTTCCTGCTCCCTCGACCCCTCCATAACAACAGAAGGCAGCAGACAGTTTTCAGATTTGGTGAAGATGGATCCCTGCTTCATCTTTAATCATGCCAAACTCAGTCCCATTTGTCATGTTTACTCTGTGGCACAAAGGATGAACCGTAGGCCTGCCCATTACCTCGACGTCTAGAATTGTGCCTAATAAATGAGTCTCCTTGTTTTGTCAAGAGCCATTTTCAAAACCCCCTTTATTTGCTGGCTTGTAGCCTACAAAAGTAGCCGAACATTGTTCTCTTAACATGAAGCTCCTCTTTCTCGCTAACGTTACtcttacatttaatattttgtgttgCCAGTGGGGTTGATTAAGATTGTGTGAGGTCTAGATGTCCTTTCTTGGACATACGAGAACCTTACTGGTCACTTTTCTGTGTCTAATTATTTAGCGCATTTCAAATTGAGAACAGGGAAATCAGACGGTGTGTACGAAAATATCTGATTTAGGTATTATTCATATTCAGCTGAACGTAAGAACAGTTGAATGAAACTGGGCATATAGATAACCAAAACAGTACAAtgcaaaactatttaaaaatgagCACTGCTAAATACTATTTGAATTACCTCAGTTGATaggttttttatgtttttattgtctAGTTTTATGAAGTGATAAGTTTGAAGTCATTTGATCAGAATGCAATTTTCTGCAAAAATATCAGCATTTATTTGTAAGTTGcaatgtaatttaaatattcGTGTCGCCAGGGCTGTGTAGAGAAAATGCGTatattgcatgaatgaatgagctaCACTATTTTTCGTTTTTCCTGTTACCTCGTCTTTaagtttctgtttttattctacGTCAGATAAACATATGCACGTATGtcatccttctttctttctttctttttctttctttctttctttctttctttttattacttctaatgtgttgatattttatcgtttataagattatttttaCATTCCAAAGATCAGTCTTCCTGGTGATGatgtattttccttttttttcacatttctatGTCTCCTCCTTTCTGCTTAGGCCTTTCACTGTACACCTTTGTTATTTGTAAATAGCTAtagaaatttaataaataaaaaataataatcactgtA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246838 lncRNA downstream 192281 9494623 ~ 9505750 (-) True G208391
XR_004579419.1 lncRNA downstream 251927 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA downstream 251981 9441986 ~ 9446050 (-) True LOC117598997
TU246658 lncRNA downstream 574150 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 594905 9102911 ~ 9103126 (-) True G208189
TU246919 lncRNA upstream 27445 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 44072 9746496 ~ 9748039 (-) True G208473
XR_004579453.1 lncRNA upstream 127203 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA upstream 127203 9829627 ~ 9843423 (-) False LOC117599011
XR_003402943.2 lncRNA upstream 134826 9837250 ~ 9838412 (-) False LOC113528446
XM_026916412.2 mRNA downstream 6068 9675762 ~ 9691963 (-) False hoxb3a
XM_034309936.1 mRNA downstream 6289 9675762 ~ 9691742 (-) False hoxb3a
XM_026916410.2 mRNA downstream 9520 9675762 ~ 9688511 (-) False hoxb3a
XM_026916414.2 mRNA downstream 12627 9675762 ~ 9685404 (-) False hoxb3a
XM_026916413.2 mRNA downstream 12864 9675762 ~ 9685167 (-) False hoxb3a
XM_026916418.2 mRNA upstream 8715 9711139 ~ 9713742 (-) True hoxb5a
XM_026916420.2 mRNA upstream 12586 9715010 ~ 9717469 (-) True hoxb6a
XM_026916032.2 mRNA upstream 21937 9724361 ~ 9728854 (-) True hoxb7a
XM_026916728.2 mRNA upstream 27427 9729851 ~ 9732566 (-) False hoxb8a
XM_026916727.2 mRNA upstream 27427 9729851 ~ 9732566 (-) True hoxb8a
XR_004579423.1 other downstream 223553 9466480 ~ 9474478 (-) False copz2
TU246802 other downstream 278447 9409804 ~ 9419584 (-) False prr15la
XR_004579397.1 other upstream 28418 9730842 ~ 9731250 (-) False hoxb8a
trnac-gca_22 other upstream 682625 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 749072 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1730086 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1834136 11536560 ~ 11536678 (-) True LOC113528647

Expression Profile