RNA id: XM_034309993.1


Basic Information

Item Value
RNA id XM_034309993.1
length 6396
RNA type mRNA
GC content 0.46
exon number 22
gene id si:ch211-114m9.1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11450559 ~ 11493882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGAAGGTGAAAGATGAGATAAACTGACTGGTTGCGATTTTGCCCAGTTATGCAGACTACTTGTAGGAAGTGAGAGCCTATCAGGAAAAACTACCTTTCCCATAGTGCACCGGGGCATAGCGGCTGCTTGACGTTTTACGCTGGCGCTTTGGCCATCGTGGAGAATTGGGCAGCATCTCCTGACGGGGAGCAGCCTAACGCAGCGCAAAATGCACTGAAACCCCAGCTCTGTTTCCTCTCCGCTGGCAATGAAAGAGAAGGTCTGGGACAATGTAGCTGTCGCCGTGAGCCGTGCCGGAATACGGGCCATTATTCTGAGAGAAATGCGGCATCTCTTCAGCTGGAGCTGTTAACCCAGAgcagaaatatatatttctaaatatatatatagaaaatgaagaaacaatTCAACCGAATGCGACAGCTCGCCAACCAGACTGTTGGCAGGGCAGAAAAAACGGAAGTATTAAGTGATGATCTACTACAAGTGGAGAAGCGTCTGGACTTGGTGAAGCAGGTCTCCCACAGCACACATAAGAAGCTCACAGCCTGCCTGCAGGGACAGCAAGGGGCCGATGTGGACAAGAGATCAGTCAAATCACCTTCGAAAAAGTTGCCCCTGACCACATTGGCTCAGTGTATGGTAGAGGGAGCTGCAGTATTAGGGGATGATTCTCTGCTAGGTAAGATGCTGAAGCTATGTGGGGAGACGGAAGAGAAGCTGGCCCAGGAGCTCATTGTCTTTGAGCtccagatggagagagatgtgGTGGAACCTCTCTATGTCCTGGCCGAGGTGGACATTCCCAACATACAGAAACAGAGGAAACATCTAGCCAAGCTTGTTTTGGACATGGATTCGGCACGGACAAGGTGGCAGCAGTCATGCAAGTCCTCTAGTCACCCCAGCAATCTTCCCCCAGCCGGGGCCAAAGCAGATGCGCTCcgagaggagatggaggagacgGCCAATCGCATGGAGATCTGCAGGgACCAGTTGTCAGCGGACATGTACAACTTTGTGGCCAAAGAAATAGACTATGCAAACACCTTTCAGACGCTTATAGAGATTCAAGCAGAGTATCACAAGAAGTCTCTAGAGATTCTGCAGAGTGTGCTGCCACAGATCAAAGCTCACCAGGAGGCTTGGATAGAGAAGCCTTCCTATGGCAAGCCATTAGAGGAGCATCTGACCCTCAGTGGCAGAGAGATAGCCTTTCCCATTGAGGCATGTGTCACCATGCTGCTGGAGTGTGGCATGCAGGAGGAGGGTTTGTTCCGTGTGGCCCCTTCAGCATCCAAGCTGAAGAAGCTGAAGGCATCTCTGGATTGCGGGGTCCTGGATGTGCAGGAATACTCTGCAGATCCACATGCTATAGCAGGAGCTCTGAAGTCATATCTCCGTGAACTCCCCGAACCTCTAATGACCTCTCAGCTCTATGATGAGTGGATTCAGGCTTCAAATATTCAAGATATGGACAAGAGGCTCCAAGCCCTCCTGGCTGCATGTGAGAAACTTCCAACAGTCAATTTAAGCAACTTCAGATACTTGATTAAATTCCTAGCCAAGCTCACTGAATACCAGGATGCCAACAAAATGACGCCTGGTAACATTGCAATAGTGTTGGGACCCAATCTGCTGTGGACGCATTCTGAAGCGAACATGACAGAAATGATGACCACAGTGTCTCTGCAAATCGTTGGCATCATTGAGCCTATCATCCAGCATGCCGACTGGTTCTTCCCAGGAGATATTGAGTTCAACCTGACAGGCAGCTACGGTAGCCCCATCCACACCAACCACAACTCCAACTACAGCTCCATGCCCTCGCCAGACATGGACCAATCAGATCGCAAGCAATCGCACGACCAAGGCCGACGCCCCCTCAGTGTTGCCACTGACAACATGATGCTGGAGTTCTACAAAAAGGATGGCATTAGGAAAATACAAAGTATGGGAGTCAGAGTTATGGACACATCCTGGGTGAAGGGTAAAGGTGCATCCACGCTTGCTCGAAAAGCCTCATCCACCCCTCCCAGTGCCCAGCCGCCTGGATCACCCGCTGACACACTCATAACTGAGCAGCCTGGAGAGCTGAACACATCCCCCATTCCCACCCCTCCTCCAGTAGACAGGGCTAGCTCCAACGAGGTGTCACCCCACCGGCCGGACCCCTCTCATGCCCATGCGCCCCACGGGGAGGAGCGGCCGCCCCCTCCTTAcccttcctcctccaccacctcccACGCCCCTCATCACTTCTATCCCAAACCCCCTCCCTGTGCACGGCCAGTGGCCCCAGGGCCCGAGTCACAGCCCCCTGACTCCCCACCCTCCCAATTACGCTGGTCCGGCTATGGCCCTCCTCAACCCCAGGCACccccttcctcttcttcttcttcctcttcctcttcttctctcgACATTAACTCCAACCCCAAGCCCAGCTGCCTGCACTTCCCCAAACACGGCCCAGCATGTGAGCTGCCAGACGTGAACACCTCCCCACTCTACGTTAAAACACCCCTCATTTTGACCCGCAACGAAGTGGCCCTCGGAAACCCCCCTAGCCTTCCCACATCCGGCCCCCCTCCGTGGGCTGCCTGTCCATGTGCCCGCGAACGAGGACCCCCCAGGCTGCCTAGCACTCTGAAGAGCAAGGAGCTCTCGCCTGTGATTGGCCATAAGGCCGTGCAGGCGGCAGGACAGCCAGTGCCCCCTGTCGGCCAGCAAAGCAACAGCCAATCACCACATTCAGCCGAGCACAGCCCTCACACCCTGCGTAAAGCCTCGAAGAAGCTGGCCCCTGTGCCACCCAAGGTTCCTTATGGCCAGTCAGGGGCGATGTCCGACCAGTCCACAGCAGATCTCTTCAGTTTGGAAATCCCCTCCATCAATGTCAATCTGGACAGCCTGCTCGACGAGTTCAGGGTGGGGGCGCCGTGCCGGAGCTCCCTGGCCGTGGCTGACTCTCCGGAGGGGGAACGCGTGATTGAGGAGGAGTCACAGAGCACCACGCTGTAACCCCAGAGCCCAGCCAGTGGCTGACTAGCCCTGCCGAGCTCCCCCACCTTCAGCTGAGGTCCTTTGAGCAACCAGGCCTCCATCAACCTCACCTACCCCACCCTCACCACTGGAGCTGGACCCCCaacccaacacaaacacatatgccTGCTCTAACCTTTACATTTATCAGTAACTAATCAGAATATCACCTCCTCTTCTCACTGATAAGTAGACATGGTATGTGATTACATCTTCACAAGCTGTGCCATAGCAAAGACAAGCAATGGAAGACTATAAGAATGTTGCAGAATTTATTGTGTTGTGAAGAATGTGCCACGTTACATGTTTAGGTTTTTCTCTGTTCGACTCTGTTATTTCTGCCTTATTGGAGCCTGCAGATAATTTGCAATACAATGGACACAGAGGGGATTTTGTTGACTCCAAAGGAACATAATATTTCTATGTGCTGGAAGCATGAGATCAAAACGTCAAAGGGTAGTATTTGCTCATATTCTTTAGTGTCTGAGTTGGTAGGCAGGTTTCATTTCTTGTAAATGAATTGAAGACACAAAGCATGCAACTTTATTTAAGTCCAGTTTTACAATGTTGAGGCCTTGGCTTTCTTGCTCTCGTcctctcacgctctctctctctctcactctctcattttctctctatatATGTATCAGTCTCTCTGACAAACACATGCCTATATACACACCACTGCTTTGGCATAGACAGTATCATGACAATATTTCTAATTAAGTGTCTAAACGTGCACAGATCAAATCAAGCACATTATGAAAATATTCAGAGTTGTTTGTAATACACTAATAATCTGTGAAACAAGAAATCATAGTAAATGTTTTGCCTCACTGTCCTAATACTTGATAGGACATGTCAGTGGTACGTATGTACTCTTCACACTTCCGATGCCAGCTGTAAAACAGATTGGTTCTGCTGTAAAGAGAGGTGAAACCATTAAGACGTATTTTGTGCCTCCCATTCTGACTTCGTTATCAGGACAAGTGTAATGACAGGTTCCTCTTCTGTGTAAATACAAAGATTGTACATACTGATCTGTAGATATGTGTTAATGAGAGGACAAATGTAAAGGCaaatatgaattatatattcatatgtgTTACATGCCATATTTATCTTGTATAGAGATAATGTTCTATGGAAATGGAGTATTATTTTGTCCCTGAATACTTGTCGCCAGATTCACACAGAGTAAGTGAGCTCTTGCACTTTTGTAAGCCATGAACACTaactataaaaacataaatgcaGATATGTCAAAGGCCTAAGTGGAGTCTAGCCCTAAAATCTGAACTGCAAAATTTACATAACCTTTGTTCTCCAAATTGGTGTTCATTTGGATTCTTGCATTTACTGACCTTGCATTTGGATACAGTGCAGTTCCATAAAGACACAAATAATGGTGAACGGCATTACACAAAAGAATAGCTTTACTGAACTATAACAAGACAAGAACTGATTGTTTACTTTATAATAAATGGCAGGGAGACCTGCAGCCCTCTCTGGTACTTGGGTCATCCTAAGGCACATCAGAACAGAAAACAATAAGAAATACATTTGTCATTTGTAGCCATATATTTGGTCATTTTGTCGGTCACCAAAGCTGTTCCCTTGCCTTTATTCTCCTCTATCTGGTCGGCTACTGCCACCTTACGGGGCCTTTGTTTTCTTATATGGACTTCCCTTTTAAAGGTATCTTTTACACATCAGGGCTCATTTTCAGACTGACATTATCAAAACAAGCAGGCTCTGTTTTACCATGATTCACCATAGTCTTGCTGCCTTCTCCCTGAAACACTCCAGTCTGAAGCTTTAGCCAAAAGAAGGCTGGACAGTAGGTTAGAAGTGCCATCTGTTTGGTCAGTAGACTCACAAACCAACAGATGCTGTAGTATGTCATGTCTGAATTGCTTGAAAGCAGGTGGAACACAAATAGGGCCAGAGAAAGTGCAATTACAGTACATTCTATTGTTAACCTCACAGAGAAGTGGCCATAAGAGCCATGCATTTTAAACTTACCAAGAGCCTGACTCTGAAGCAATCCCAAATGTCATGGCTttcattattgttttctttgaaTAAGCATTAATGTACTTCAGGGACAAGAGGACTTCTTTGCTGAAATATATGGTATGACTCAGTGTGCATTCTCAATTACTTCTAATATGATGGTTATTGGTGACTGAGTACTCTTTTAATAGCTGTAGTGATTATACAATGATAATTGCAAGTGCCCTCACAATAGATATTTATGTCCTGAAGCCAGTGGCGAGTTTTGTGTATATTTGAgggtttttacatttttttgtgatGGTTTCTTCAGTGTTTTATGAAGAGGCAGGTGTGCATTCAAAATAATTGAGTGTTGATTGAATGTAATTGTACTTTTACAATGACCTGCAACAAGGTAAAGGCTTTGTCAATACCTTATAGCAGCTGCAATAGACgcatggtttgttattttatttaggtGACTCTTTGCGTTTAATCTGATGCTTTTGCCAGTCATTTTGAAagcttgtgtaaatgtttgggGATTGAGGGAGGGGATTTTGATGTGAATGCACTCGTCTGTATGTTGTAATCATACAGTCCATAGCAATCCATTCCTGAGGCCATATCATTTttctctgaccttttttttcatGCAGCTGCTATAATTGTTGGGATCAAATCCACCAAGGACCACAGGGAATACagacatttttacacaattgaaccacaaattatttcatttatctgCATTCCTTCTTTATTAAGGAAAATAGCTTATTTGTGAATTCAGGTGCTGCTGTGCAAGGTTAGGTTCACCACATTCATGTGTCACAGGTCCTTAGTTCAGTTATATTGTACTtcaatgaattaaattaaaaaaaaaatgacacaagaGACAAGAGCCAGACATGCATAACATATATAACCATCATATGTTTGTACCCCCGAAAGCTTTCGGTTGACATTGCAGAAAATGGATGTAACAATGCAATGCATGCACTTAGTCTCTTCAGATAATTCATGATTCCTgtttctttgatttcttttaaGACTCTTAAATGTTATCAGTAAACTGGGGAGATGGTGAAAAATAGCAAGTGTGTGAACAGCTGGTTAAAGAAGTGTCATGGATTTATGTATAAGTGCACAGTGTCCATTGATGTACAGCCTCTCCCCTGCATTCACAACTTCTGTACAAACTTTGCCTGTATGTCACTCCCCTCCCTCCCCCTCCTATCCCCTCAGCTTAGCATATCAGTGGAACAACACAGTCTGTACTGTGAAGCCTACCGCAATCCTGATCAGAATGTCAGATATAGATATCTATATTAAActctacatttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247909 lncRNA upstream 71772 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 468279 10971980 ~ 10982293 (+) False LOC117598771
XR_004579343.1 lncRNA upstream 468482 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA upstream 468494 10971721 ~ 10982078 (+) False LOC117598771
TU247667 lncRNA upstream 503031 10943255 ~ 10947541 (+) True G209069
TU248035 lncRNA downstream 124153 11618035 ~ 11618234 (+) True G209390
TU248037 lncRNA downstream 140030 11633912 ~ 11634481 (+) True G209392
TU248059 lncRNA downstream 214846 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 314379 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 525981 12019863 ~ 12021132 (+) True G209775
XM_026916174.2 mRNA upstream 45026 11403315 ~ 11405546 (+) True pmp22a
XM_034309899.1 mRNA upstream 62552 11373316 ~ 11388020 (+) False cdc42ep4a
XM_026916938.2 mRNA downstream 7013 11500895 ~ 11508789 (+) True ndel1b
XM_026916939.2 mRNA downstream 7021 11500903 ~ 11508789 (+) False ndel1b
XM_026916080.2 mRNA downstream 37639 11531521 ~ 11535692 (+) True atp5pd
XM_026916035.2 mRNA downstream 44452 11538334 ~ 11560829 (+) False unm_sa1261
XM_026916034.2 mRNA downstream 52469 11546351 ~ 11560829 (+) True unm_sa1261
TU247340 other upstream 1032691 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 1032691 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 1032691 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 1470618 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 2387257 9061565 ~ 9063315 (+) False nupr1b
XR_003402977.1 other downstream 43165 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 73237 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 664824 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1981946 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4319360 15813242 ~ 15813331 (+) True trnar-ucu_8

Expression Profile