RNA id: XM_026916456.2


Basic Information

Item Value
RNA id XM_026916456.2
length 6518
RNA type mRNA
GC content 0.45
exon number 12
gene id aatka
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11031033 ~ 11072825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGACAGGGCTATTATACGCTTCTTATGTCACTGCTGGAGGGACGTCAGACACATTCTGACATGCgtagagcagagagagaagacGCCCAGCAGAGACTAAAGGATGACTGAGCTCTTAGCTCTAACTTCTTAGATCTGGGCATTCATTACAAGAACTTCGCACCAAGGTACATGCCAGCCTCCAGGCCGCAGTTGCAGACACAAGACATGGGAATGTTGAGGGACAGTGTGTGGTGGTGCGGCAGGATGCCCATGGCCACTGGGAAGAAAATGAGAAAGGACTGCATTCCTAACTGGATGAGAGCTCTGAGTGTTCTTGGGAGTCATGCCGGCTTGAACTGGGCCAGCACTGCTGTTCTGTTTCCTCCCTGAAGACCCAGCCATGGATTTCTGCTTTGCAGTGATGACTGTTTTTTGCATCATCTTCACTATCTGCGCTAGTCTCTTCACCATCTTCCGTTGACTGCAAATGTGTTGCTTTCCTGTTCAGCTGCTGAAGTCAGCGGATCTTGGACGCCACAGCTTGCTTTACCTAAAGGAGATTGGCCATGATTGGTTTGGCAAGgTTTTTCTGGGGGAGGTGAATGCTGGACTGAGCACCACACAGGTGGTGGTGAAGGAGCTGAAAGCCAGTGCCAGCATACAGGAGCAGACGCAGTTCCTGGAAGAAGCTCTACCTTACCGTACTCTGCAGCATCCTGCCCTCTTGCAATGCCTGGCCCAGTGCACAGATGTCACACCCTATTTGCTGATTATGGAATACTGCCCTCTGGGTGATGTCAAAGGATACCTCCGTAGCTGCCGGGCAGCAGGTTCAGCCACCCCTGACCCTTTCATCCTCCAACAAATGGCGTGTGAAATTGCCTCTGGGCTTCAGTACCTCCACAAACATAATTACATTCACAGCGACCTGGCTCTCAGGAACTGTCTCCTTACTTCAGAGATGTCCGTGAAGATCGGAGACTATGGCCTCTCTCACAGTAGGTACAAGGATGACTACTTTGTGACGGCAGATCAGATTTGGGTGCCACTGCGTTGGATCGCCCCAGAGCTCATTGATGAGGTCCATGGCAACTTGTTAGTAGTGGACCAGACAAAGGCCAGCAATGTCTGGTCACTGGGTGTGACAATCTGGGAGCTGTTTGAGCTGGGGAGCCAGCCATACAGACACTACACAGACAGGCAGGTGTTGACATATGCAGTGAAAGAGCAGCAACTGAAGCTGCCAAAGCCTTTGCTGAAAGTCCCACTGTCTGAACGCTGGTATGAAGTAATGCAGTTCTGCTGGCTGCAACCAGAGCAGCGGCCTGTTGTGGAAGAGGTCTACCTGCTGTTGAACTATCTATGTGCTAAAGGTACCAGTGAGGCAGAGGAGGACTTTGAGAAACGCTGGAACTCCCTTAGACCAAGTCTAGACACAGGCAGTTCCCAGAGAACCCCAGCCCTAGAGGTACCCTCATCTACTTCCTCATTCCCTCTGCTGGAGCACTTCTCCATGGTTGACAGTTTCCAGTCTGAGAATGGTGATGAAATACTAACAGTCACTGAGACCAGTGATGGGCTCAACTTTGAGTACAAGTGGGAACAGGCCAGAGCTGAACAGCCATACTGCTCCTCATCTACAAGTGGGCCTCTAGGAAGTAGCAACCCACATTATCAGGACATATACTATCCCCTCAGCAGTTCCACAGGAAGCTGCAAAGGGGAGAGTCTCACTCTGGGTGTTTCTCCATCCCAATACAAGTCAGATTACCCAGGTGTGGTCCCAGTGTTGAGTGCACACAGTCCGTCTGTTAGCAGTGAGTACTATATTCGCATTGAGGAACCTGTAGAGTGCAATATCAGTGTGGAGGAGGCCACTCTTGACTACAGTCCAGAACTTGAGGCCAGCAAATGTACCTTCTCCATGGCTGACATAAAAAGTCCTACTGAGGCTCATACAAACACATACTGGTCAGGAGCAAAAGACTCTAATAGCATTATCAATGATTCACAAGCTAGTCCAACTACTGGCCTCAGTGTGGAGCCACCTCAGAGAAAAGATCTGAACCATGTGGATTCTGCTGAACAATTAAATCAATACTTTTCCCCCAGTGACCGAGATAGATTGCACTGTGAACTGACACCCTCAGGAGAACAGGAAGTTCCTTTGAAAAGAGGCCAACAATCTGAGTCTTGTCTTAAGTCTGGGAGCTTACACAATACAGGTGTACAAGAAACTCCACATGGCATATCAGTTTCACTGAGCAGCCCCAGTTTGGGACAATGTGACCCCTACCTTGAAGCCAACCAGAGGACTGCTGAAACAAATATGGCCAATGAGGCCTATTATGATATGATGGGTAGCCTACCGAAGAATATTCCCAGGCCACACAATATAACTGTTGATGTTGAAGCTGCTGATTGTCTTCTTATGGGTGCTGCTGATCCAGAGGATGACATCAATCATTTTACTGAGAGTGAAACAATTAACTGGGCCTCAAACCATTCCACaaataacaacactttaaaCTTTGATGATCGACAAACAAGGGGGTTTCTTGACACCTATCTTGATGTACACCATACCACAACTTCCTCCAGTGCCCAGAGCTTAAGGCCAGGGACAATAACTACCAGGCAAAATTCTCCAAGTAATCCCTCCGATACATTTAAACAGCATTCACGCATTGCATTTTCATACACAGATTCAtacacagagtgtgtgtcatATATACAACTCTGCTCTGAGGATCAGAAGATGGTAGAGTCATCAGCCCCAGAAAAACACCAAATTATACATCCAGCCCAGAAGAACACTCCTCATCTGCATATCAGAGAGAATATGACACACTTCACTATAAGGGATTATTCAAATAGCAATCCTCTTTCTCTTGTAGCTGAGAAATCAGTGACTAAAGACAGAAGCACAACTCCTGCACAAGACATAAAAGTGCAGTCAGCTGGTCCTACAGTCATGCCTGCAACTCTGTCTGAGTGTGTTTCTGAGTGCTGTCATACAGTGGACAGCATCAGCCTGGTAAACATTGATGACTGCAGTGATGGTGATGTTACTGAAATTATTTCTGAGGTGTTTGCAGACTCTCCTATTGATTTTGCAGAAGTTGGAGACATTAACCTAGCACACATACCCTTGCATAGAGAGATTCGAAACCAAGACCCTCAGGAATTTATAGACCTTGCCTCAAGTAGCAGCCCCTGTGAAGCCTTCAGTCCAGATGCTTACCACACATCCATTCAGCCCAAATCACTGGACAGTGGTTATGACACAGAAAACAATGAGTCACCTGAGTTTGTCATGAAAGACTTGGAGGGAAAACCAGTTCTCAGTACAAGTGTGGAATCAGAGTATGAAATGGTCCTTCAGATGGACCTTGGAGAAAATGATTTGACCCCAACTAGCAATAGTACCCTTAAGCTGACAAGCCTGGGCAATAGGAATCAATACAGAGACTCCGCTTATTTTTCAGACTACgatgcagaaaatgaaaaaagtccctgtgaaggagGCAGCATCTTCTTTGACAACAAATTGGATAATTTCTTTGGAAAAGAACCTGTAAAAGACAACTCTCTTAAGAAGGCTGGGAGAGAGGGGGGCTGCCCAGTGAGTCAGAAGGAAGATCAGCATCATTTTCCAAGCATGATAGAAAATGAAGCTAATGGTTTGCTGAGTGTCAAACAGTCGTGTCTTGAGAGGAGGAACATGGAGTTTGATCTAAGTTCATCTCCTGCATCAGGTCCAGTGATTACAGCGTTGGCCCCATTTCCTCCAGAGATGGGGGGATGTTTGACCAAAGAGTCTGCTCCAGATGATGGCCTTGGAGTGGAATCTGAGCACTCTGGAGAAGAGCCAGCCTCTGAATGCTTCTCCAGCATGGCTTCTGAGGGCTCATCCACAACACAGGAAGCCACCACCATGGAGGACCAAGTTAACAGTACTAGCGTGGGCTTCTCATCTGCAGACTCCCTGGGTTCAGCCTCCACTATGTTGGAAGTCAAGAACTGTGAGAATAGGGAAGACAATCCAGACTGTCAGATGGATGGGAAAAATGAGGAGAATAAAGGAGTGGAGGAAAAAGCAGAGGTGGTAGATGAAGCTCTTCTGAATGTTAAGCGGGATAGTTCTCTGGACAACATTCTGCCTGCCTTACCAGAGAACCTGGACATACCAGCACCCCTGGGGAAttgtgaggaagaggaagactCTGATGACAGCGATGAGTCGGACGAAGAGTTGCGTAGCTACGATGTCCAAGAGCAGAGTGAGGAGAGCGAGGAGGAATTCACCACTGTTCCGATGGTGGTGGTGAGTGAGCGAAGTAGCACCAGGCACCTGCGTAGCCTCCTCAAAATGCCATCCCTCCTCACACAGTCCTTCTGCGATGAGCTAGAACGCAAGAAGAAAGCTGTCTCCTTctttgatgatgtcactgtgttCCTTTTTGACCAGGACAGCCCTACAGGTGAACTGGCAGAATACACCTTTCCTCCAGGGATAGAACCGAACGGCCAGGCAGCAGAGTGTAAGGAACATCCATCACAGAAGGAAGTCAGTGACACTGATAATTCCTCAAATGGGAATGTCTTAGAAGATAGTGGGACCTTAGAGTGGGAGAGTGACTTTCCATTGATGCCCAATGCTTCAACCGTAGAACCTGCCTCTGACAAAATCTGCACTCCCCCAAATTCTCCGGTCAAACTTCCTGAGGAGAAGCCAGCATCCCAGTGTTCCCGCTTCAGTGTTTCCCGCTTCTCTATTACACATGTGTCTGACTCAGACATCGAGTCCATGGGAGGTAGCTGTTCAGATGGAGACCAGGCATGAGAACGCATCCAGATTTCCTTTTGGCCTGATCCGGCTCTAGATCCTCTTtggtgtttatttaatgttctggaCGAGGGTTCTCTGAATCCGGAAGACAGTGCCTCATGCTGTAATTGAATTATATTAGCCAACCCTTTCTTTGTGTCTTGAGCCAGAGGTTGGCAGTGACATTGTCTGTTATAGACAGCATTTAAAAGTTCAGAAAAATCTCTAAGGAAAATTTTATGTATGCATATTTAAGATGATAAGATTATTTGCAACATTCAGTATCAGCACTCATATTGCAACAAATCACTTTATTACAAACTGTAGCAACCATAAAGGTATTCATTACATTGCTGTAATCCTCACTGGCTTACTTACAGTGCACTCATCAATCATTGGTCAGATCTTCCAGATGTTGGTTTTAACTgcaaagtaaatgaaaaaagcTAAAGTCTTGGTAAGACAACCCAAATCAAATAACATTCAACTTCTGTCAACTACAAACGAATTGTGTACCAGTGTTGGAAACCATTTTCCATGGAGGCAATCGCTTTTGACCACTTTAGGCTAAAATATTATGGCTCAGGTAAATTGTATTGAAGGATGTAAAAAAATTGGTACGGCATGAAAGTTTAAGCCACATTATGAAGATACTTGTGTTTAATATAATATGCTTCCTcacttttccccattttccCCTCTGTGCTGCTATACAACCCTGAGGATGTGGAAAATATTACGTAAATGCACTTTCTTTGTTGAAGCCTGGAGGTTATGTGCAAATTTGTTTCCATCAACAATGTCAGGATGCTTGTCTTGTCTATTTATACAGATACCGTTAAAATGTATCCCAGTCTGATTCCTGTCCCTGATGTTCACCTTTATATGCAAGTGAACTTTCATCTCCATGTCTGTTGAGGTAGGgatttagcattttattatatgtttacaTATGCTGGGATTATCACATTAGTCTTTAGTATCAGTGAGCTATAACTACACAGTGATGGGATTTTTGTCGTAACAGAAGACTCCAATATTTGCCAGTAATATGGCTGTATAAGAGCCTtaactagagagagagaagagatatCAGATCAGGTAACTTCACTGAATACTGCATAACTGATTAAGATGCAAATTTTAAAGGACAACTCCACAGATTTGCCAAATAACCTCAAATTTCAGTCGGATGACCTGCAGACTGAAATATTGAATTACAGCTAGGATGTCTTTTAGGATTGCTTTTATGCAAATTTGCTGAgattttttcagcttttctcatacaatcttagaaaaaaaagagtgagttCTAGTTTTCTAACATTTCTATTTGGACCAGGTAGAAATGTTTAAGggttccccagagggacaaaccaaagaggGTGCAAGATGgaatttttttctaagagtgtaggtGAAGACTGTGAATGTGATTACTGGGAAGTAATACTCCACACCTAAAATGCTCCAGGACAGCTTTTTgtaatacagtttaaaaaattaaaaatttatttaaagtacaCCAAGTGTTAACATGACTTAGTGTAACAGATAGGCTGCTTACTACCTATAAGTTATTTGCAAAAAATGTCCTTTAAAATAAAGAGGCTCATTACAGCCACTGGCAGCTCTCTGAACAGCTCCTATAAATGGTACCTCATAATGCTGGAAGACGCTGGATATGTATTGTTAGAGAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247679 lncRNA upstream 81385 10971980 ~ 10982293 (+) False LOC117598771
XR_004579343.1 lncRNA upstream 81588 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA upstream 81600 10971721 ~ 10982078 (+) False LOC117598771
TU247667 lncRNA upstream 116137 10943255 ~ 10947541 (+) True G209069
TU247664 lncRNA upstream 131250 10932059 ~ 10932428 (+) True G209067
TU247909 lncRNA downstream 207255 11280080 ~ 11378800 (+) True cdc42ep4a
TU248035 lncRNA downstream 545210 11618035 ~ 11618234 (+) True G209390
TU248037 lncRNA downstream 561087 11633912 ~ 11634481 (+) True G209392
TU248059 lncRNA downstream 635903 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 735436 11808261 ~ 11822910 (+) True LOC113528367
XM_026916793.2 mRNA upstream 57657 10984857 ~ 11006021 (+) False gas7a
XM_026916792.2 mRNA upstream 57657 10986024 ~ 11006021 (+) True gas7a
XM_026916187.2 mRNA upstream 97416 10962975 ~ 10966262 (+) True LOC113527977
XM_026916801.2 mRNA upstream 122679 10937303 ~ 10940999 (+) True noxo1a
XM_026917293.2 mRNA upstream 143700 10911457 ~ 10919978 (+) True gid4
XM_026916711.2 mRNA downstream 164688 11237513 ~ 11372332 (+) True sdk2a
XM_026916712.2 mRNA downstream 164688 11237513 ~ 11372332 (+) False sdk2a
XM_026916715.2 mRNA downstream 164688 11237513 ~ 11372332 (+) False sdk2a
XM_026916716.2 mRNA downstream 164689 11237514 ~ 11372332 (+) False sdk2a
XM_034310070.1 mRNA downstream 243632 11316457 ~ 11372332 (+) False sdk2a
TU247340 other upstream 645797 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 645797 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 645797 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 1083724 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 2000363 9061565 ~ 9063315 (+) False nupr1b
XR_003402977.1 other downstream 464222 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 494294 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 1085881 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 2403003 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4740417 15813242 ~ 15813331 (+) True trnar-ucu_8

Expression Profile