RNA id: XM_026916466.2


Basic Information

Item Value
RNA id XM_026916466.2
length 1888
RNA type mRNA
GC content 0.50
exon number 13
gene id ddx5
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12922324 ~ 12928752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggTATATAACTCCAACGAGGGTTCTTTATTACCGGCATTGAGGACGCCATCACTGCCGGTACAGGAAGGAGTGGGGCCAAATTAATCTTATAATagtcttttaaattttttttatttattagagtaTTCATTTGTAAAAACCTCGTTGATTACAAAATGCCCGGGTATTCCGACAGAGACCGCAGCCGCGACAGAAGCAATTATGGCAACAGTTACAGCAACGGGCCTCCGCGCTTTGGTGGGAGTCGAAGTGGTCCATCGGCCGGGAAGAAGTTCGGCAGTCCGGGAGACAGACTGCGCAAGAAACACTGGAACCTGGACGAGCTGCCCAAATTCGAGAAGAACTTTTACCAGGAGCACCCGGATGTAGCGCGCAGGTCACCGCAAGAAGTTGAGCAGTACAGGAGGAGCAAAGAGATCACAGTCAAAGGGAGAGACTGTCCCAAACCTACAATTAGGTTTCATGAGGCCAACTTTCCCTCTTATGTAATGGACGTGATCAATAAAATGAACTGGACTGAACCAACTCCGATTCAATCTCAGGGGTGGCCACTGGCACTCAGTGGCAAAGATATGGTTGGCATTGCCCAGACCGGATCTGGGAAAACGCTTTCGtaTTTGCTTCCTGCTATTGTGCACATAAACCACCAACCATTCCTGGAGCGTGGAGATGGACCCATTTGCCTGGTGTTGGCTCCCACTCGTGAGTTAGCCCAACAAGTCCAGCAGGTAGCAGTAGACTACGGCAAAGCTTCTCGTCTCAAGTCCACCTGCATCTATGGAGGAGCTCCTAAAGGACCACAGATTCGTGACCTAGAGAGGGGGGTTGAGATCTGCATTGCTACTCCAGGGAGGCTTATTGACTTCCTGGAAGCTGGAAAGACAAATCTGCGCAGGTGCACATATCTGGTGCTGGACGAGGCTGACAGAATGCTGGATATGGGCTTTGAACCTCAAATCCGTAAAATTGTTGACCAAATCAGGCCGGACAGACAGACTCTGATGTGGAGCGCTACCTGGCCCAAAGAGGTCCGTCAGCTGGCTGAGGACTTCTTGAAAGATTATGTCCAGATCAATGTGGGAGCTCTGCAGCTCAGTGCCAACCACAACATCCTGCAGATAGTGGATGTATGcaatgatggagagaaggaggaCAAGTTGCTGCGCCTGCTAGAGGAGATCATGAGCGAGAAGGAGAACAAGACCATCATCTTTGTGGAAACTAAGAGGAGATGCGATGACCTCACGAGGAGGATGCGCAGGGACGGGTGGCCTGCAATGGGTATACATGGAGACAAAAGCCAGCAGGAGAGAGACTGGGTGCTCAATGAATTCAAGTTTGGCAAAGCACCCATTCTAATTGCTACTGACGTGGCATCAAGAGGTCTAgATGTCGAGGATGTCAAGTTTGTAATTAATTTCGATTATCCCAACAACTCTGAGGACTACATCCACCGCATTGGCCGCACGGCACGTAGCCAGAAAACTGGAACAGCCTACACCTTCTTCACACCTAACAACTTTAAGCAAGCGCAAGACCTTGTCTCTGTCCTCCGTGAAGCCAACCAGGCCATCAATCCCAAACTCATCCAGATGGCAGAAGACAGAGGAGGTAAATCCAATTGGTCGTTCAAGGGGCGGTCGAGGTGGCGGGTATAGAGATGATCGCCGGGATCGGTACTCCGGAGGCAGACGGGACTATAACTACAGCCAAGACAGTCGTGGAAGTGATCGCAGTTACGACAATGGACCAAAGAAAGCCTTCAGTAACAagacacagaatggtgcaacaTACAGTAATGGGGCCAGCAATTACAATGGAAACAGCAATAATGGCTTTAATGGGGCTTACAATGGACAGTCCAACTTTAATGGCAATCAGGCTGG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249018 lncRNA upstream 101040 12821076 ~ 12821284 (+) True G210209
TU248969 lncRNA upstream 142188 12779249 ~ 12780136 (+) True G210160
TU248885 lncRNA upstream 373821 12546433 ~ 12548503 (+) True G210086
TU248698 lncRNA upstream 541338 12378946 ~ 12380986 (+) True G209945
TU248695 lncRNA upstream 543911 12378159 ~ 12378413 (+) True G209944
TU249234 lncRNA downstream 116683 13044990 ~ 13045833 (+) True G210384
TU249423 lncRNA downstream 437377 13365684 ~ 13365893 (+) True G210532
TU249525 lncRNA downstream 516441 13444748 ~ 13445227 (+) False znf653
TU249558 lncRNA downstream 531672 13459979 ~ 13460490 (+) True G210655
TU249616 lncRNA downstream 733867 13662174 ~ 13663501 (+) True G210698
XM_026916421.2 mRNA upstream 1394 12873265 ~ 12920930 (+) True smurf2
XM_026916509.2 mRNA upstream 49474 12867525 ~ 12872850 (+) True kpna2
XM_026916505.2 mRNA upstream 60314 12830195 ~ 12862010 (+) False bptf
XM_026916467.2 mRNA downstream 1913 12930220 ~ 12935022 (+) True pglyrp6
XM_026916390.2 mRNA downstream 11463 12939770 ~ 12963774 (+) True si:ch211-194b1.1
XM_034309990.1 mRNA downstream 11463 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_034309991.1 mRNA downstream 11463 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_026916391.2 mRNA downstream 11463 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XR_003402925.2 other upstream 733735 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1344501 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1385159 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 2504443 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 547521 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 2884935 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2989910 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3212023 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4158984 17087291 ~ 17109275 (+) False srl

Expression Profile