RNA id: XM_026916467.2


Basic Information

Item Value
RNA id XM_026916467.2
length 1521
RNA type mRNA
GC content 0.49
exon number 5
gene id pglyrp6
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12930220 ~ 12935022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCATAGTTAGCGCAGGCAGTTCCTTATTTTCAAGACGGATTGTGTTCTATGAAGTTCGTACTCATGGATTTACAATACAGATGGATGTTTTACTTGTGTGTGCTGGTAGTCCAGTGCTTCACAGATGACATCTACACCAAGCACATGGATAACTTCATTAAGGTGGTGGAGATTATTGAGTCAGAGAACCCTGGAATTGGGCCTCTAGCTGTGCTGAGGGGTTTGCGTAAAGCTGCGGGCATTGACACGCCATTTATCCAGCATTATCTTGGTCCCCTCAATGACACACAGAGTCTTGTACTAAAGTCAACACTCACTGAGTACATCCACAGCGTTCTTAACCACCAGGTGGTGCAGAATGTGGAGGAAGGTGTAGTACTCACAGCAGATGGAACCACTGTGGCTCTAACTCCTCTACTGCTGGGCCTTGAGGCTGGTCTGAAGTCCACTTCCTGGCCACGTGTGCCTGGTCTCTACCCTCTTACCCTCAGCAAGAATCTAgttctttcattccttcatcattCCCAGGCTGAATATTCCACCTCATCACGTCTAGGTCCTGGCGGATGTTGGGACAAGGTGACAGATCCTCAGGTCTTCACTCTTTCTGGTGTGGCCTCCTTGGCTACAGATGCTCTAATAAATGGAGGTATGGATGGAATGATTTTAGGGAAGCATGTTGCTAAACCTAAAAAACACCTGCTAACATTGAGTAGCCTTCTGAGACAGTACTACACCTATCAGCTGGACAGTGCAGGGCTCGATGCCGCACCTGCTCTGATCAGCCAGCTTCGCAGAAGCACCTTCAGGAGGGTGATCAGCCTTGCCTCACTGAAAAAGCAACTAGCTAGGTCTCTGAGTATATATCGAAGGTTGGATGAATATcggaagaaaaacaaacaaaatgtggaGATGGATGAAGGTCTGAAGGAATTTGTCCACAGTTACATAGACTGTCCAGCCATCATTCCACGTTGCATGTGGGAAGCTCAGCCTTACCGCGGTACTCCCACTCTGCTGTCCCTTCCTTTATCCTTCCTATATATCCATCACACTTATGAGCCATCCAAGCCATGTCTGTCCTTCCAGCAGTGCTCTCAAGACATGAGGGCTATGCAGCGCTTCCATCAGGACGACCGTGGCTGGGACGATATTGGATATAGCTTCGTGGCTGGTTCTGACGGCTACATATATGAAGGGCGTGGCTGGCTCTGGCAAGGTGCCCACACCAAAGGCTATAACTCTAAAGGCTACGGCGTCTCCTTCATAGGAGACTACATGTCCAGCATCCCTTCCCAACGCACCATGGATCTAGTGAGGAACCAGCTGGCAAAGTGTGCCACAGAGGGAGGGAGGCTGGTCTCAAACTTCATTATACATGGGCACAGACAGCTGGTGAGCACCTCCTGTCCTGGAGATGCCCTTTACAGAGAAATCAACGGATGGGAGCACTTTGGGGAGGTTAAGCACTAAAGAAGATATGAAACATCTTTGCAGAATAAATATGCCTCAAATACA

Function

GO: NA

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249018 lncRNA upstream 108936 12821076 ~ 12821284 (+) True G210209
TU248969 lncRNA upstream 150084 12779249 ~ 12780136 (+) True G210160
TU248885 lncRNA upstream 381717 12546433 ~ 12548503 (+) True G210086
TU248698 lncRNA upstream 549234 12378946 ~ 12380986 (+) True G209945
TU248695 lncRNA upstream 551807 12378159 ~ 12378413 (+) True G209944
TU249234 lncRNA downstream 109968 13044990 ~ 13045833 (+) True G210384
TU249423 lncRNA downstream 430662 13365684 ~ 13365893 (+) True G210532
TU249525 lncRNA downstream 509726 13444748 ~ 13445227 (+) False znf653
TU249558 lncRNA downstream 524957 13459979 ~ 13460490 (+) True G210655
TU249616 lncRNA downstream 727152 13662174 ~ 13663501 (+) True G210698
XM_026916465.2 mRNA upstream 1468 12922325 ~ 12928752 (+) True ddx5
XM_026916466.2 mRNA upstream 1913 12922324 ~ 12928307 (+) False ddx5
XM_026916421.2 mRNA upstream 9290 12873265 ~ 12920930 (+) True smurf2
XM_026916509.2 mRNA upstream 57370 12867525 ~ 12872850 (+) True kpna2
XM_026916508.2 mRNA upstream 68210 12830196 ~ 12862010 (+) False bptf
XM_026916390.2 mRNA downstream 4748 12939770 ~ 12963774 (+) True si:ch211-194b1.1
XM_034309990.1 mRNA downstream 4748 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_034309991.1 mRNA downstream 4748 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_026916391.2 mRNA downstream 4748 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_034310281.1 mRNA downstream 93798 13028820 ~ 13042306 (+) False ptger1b
XR_003402925.2 other upstream 741631 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1352397 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1393055 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 2512339 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 540806 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 2878220 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2983195 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3205308 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4152269 17087291 ~ 17109275 (+) False srl

Expression Profile