RNA id: XM_034309972.1


Basic Information

Item Value
RNA id XM_034309972.1
length 3482
RNA type mRNA
GC content 0.48
exon number 19
gene id ilf3b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13047319 ~ 13063983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GcagtgatgaaagtgaaatgcaatgcaacaACACATTACCTTCATTTCTGAAGATGAGTATTTAATTCTTAGAAAAGAATTTccctgctgattgtttttcactgatgAGATAAAGTGAGACGAGAGCAACTCTTCCAGCTGCCTGCACTGAGTTCGACACTGTCATTTCCAAACTGAAGGACATCATAGTTTCAGCTATGCCTCCTCCTCTTCGTCATCGCTCCATGCGTATCTTTGTGAACGATGACCGCCATGTTATGGCCAAGCATTCCGCTATCTACCCCACGCAAGAGGAGCTGGAGGCTGTGCAGAATATGGTCTCCCACACTGAGCGTGCCCTCAAGGCTGTGTCTGATTGGCTGGACGAGGAGGAGAGGAGATCCACGAAACCGAATCCCATTGagtctgaaggagctggagataAAGACAGCGAGCCCAAATCAGCAGAGCAGACCACACGCTCCCTGCGTGGCGTGATGAGGGTGGGCCTGGTAGCAAAAGGCCTGCTGCTAAAGGGGGATCTGGATCTGGAGCTAGTGCTGCTCTGTAAGGACAAACCCACAGCCACACTGCTAAAGAAAGTGGCTGAGAATCTCAGTGTGCAGCTCAAGCTCATCACTGAGGATAAGTATGAGGTAATGCAGTTTATCCGTGACGCCTGCATCATGATCAAAAACACCAAGCAGCCCGCTCTTAATCTCACCATTCACCTGACTTCACCTGTTGTCCGAGAGGAAGCTGAGAAGCAGGCTGCCGGAGAAACGCTATCAGTCAACGATCCCCCGGATGTACTGGACAGGCAGAAATGCCTGGCTGCCTTGGCGTCTCTTCGCCACGCCAAGTGGTTCCAGGCCAGGGCCAATGGGTTGCGCTCGTGTGTGATTGTCATCCGGATACTGAGGGATCTCTGCACCCGTGTTCCCACTTGGGCCCCTCTTAAAGGATGGCCTCTTGAGCTTTTGTGTGAGAAATCAATTGGCACAGGGAATCGGCCAATGGGAGCTGGAGAAGCTCTTCGAAGAGTTCTGGAGTGTTTGGCTTCAGGAATCCTGATGGCAGATGGTTCCGGCATCTCTGATCCCTGCGAGAAAGAGCCGACTGATGCCATTGGTCACATGGACATCCAACAACGAGAGGACATCACCCAGAGTGCTCAGCATGCTCTGAGGCTTTCTGCTTTTGGGCAACTTCACAAAGTACTTGGAATGGACCCTCTTCCTTCAAAAATGCCCAGGAAACCTAAGAGTGAAACCCCCATCGACTACACAGTTCAGATTCCTCCAAGCACAACCTATGCTCCCCCTATGAAACGGCCTATTGAGGAGGACGAGGGTGGTGATGACAAGAGCCctaacaagaagaagaagaaacttcaaaagaaatCTCCAGATGAAAAATCAGAGCCTCCTCAGGCCATGAATGCTCTGATGCGGCTAAACCAGCTAAAGCCTGGGCTCCAGTATAAGCTCATTTCTCAGACCGGGCCTGTTCATGTGCCGGTCTTCACCATGGCTGTCGAGGTTGACGGCAAGACCTTCGAAGCATCTGGTCCCTCTAAACGCACTGCCAAACTCCATGTAGCAGTTAAGGTTTTGCAAGACATGGGCCTTCCCACAGGGGTGGAGCAAAAGGTTGCTGAACCAGTAAAAGTAGAGGTGGTGATGCCCACTGCAGAGACAGAGGTGAAGCCTTCAGTCCCGCCACCTGAAATAGAGACTTCAGTCAATGTGACCACAAACTCTGAGGCTGCTGAGAGCACTGAGAATGCACGGCAGCAGGGCCCCATTTTGACAAAACATGGCAAGAACCCAGTGATGGAGCTCAATGAGAAACGTAGAGGCCTCAAATATGAGCTCATCTCTGAGACGGGTGGCAGCCATGACAAACGCTTTGTCATGGAGGTAGAGATCGATGGACAGAAGTTCCAGGGTACAGGCTCCAATAAGAAGGTGGCAAAGGCATATGCAGCTCTGTCTGCTCTGGAGAAACTATTCCCAGATGGCTCCAACTCTGAGGCaaccaagaagaagaaagcaatGCACACTCCTGGGTTTGGAATGATGAGCGGCCCACCTGCTGATCCAGCAGCCAATCCCAGGGGTAGAGGACGAGGGCGGGGTAGAGGCCGGGGGAGAGGGTTTAATAATGGCGGAGGATATAATCAAGGTGGCTATGGAAGTTATGGATATGGGAACAATGCTAACTCTGGCTACAATTACTACAATAATGGTGGCGCTAATGGAGGATCTACAGGAATGGTCCCTGGAGCAGGTCCATCAGCCAGCGCCTCAGCAGGAGGTCCTCCAGGAACAGGTGGCTTTGCCTCGTATTACCAGAATGACGGAGGTTATTCCACCCCAGGTGCAGCGGGCAAGACCCCAGGAAAGAAGGTGCCAATGCACCAGGGAACTAAACCTCCAGGCACAGGAGCAGCTCCTGGAGCCTACCAGAATCCCTCAGGCCCAGGGCAAAGTTCCTATGGCCAGTATGGGCAGGGCTACGGCCAGGGCAAGAAGAACTTTGGCCAAACTCAAGGTGGAGCCACAGGTGGAGGTTACGGCAACTACAGCACAGCTTACCCATCCCAGGTGACAGGAGGTCCAGGGTCTCAGGACTACGGCTATGAGGGTTATAGCAACCCATCAAACTACAGTGCACAAGGAGCCAATCAGAATTATGGCCCCAACCCTGGACAATACCATAATCCCGGAGTGGGCTATGGCCGTGGCGATGGCAACATGAACTACCAGTACAGATAGACTGAACCTGATACTCACATGCTCCTCGTCACCTTCGCAGTTTTTGCTTGTACGTCTTTTCTGAAGTAGCAGCAACAAATTTGTACTTGCTCAACTGTTCTCACTGACACCTTAGTAGTTGTACAAGCGTAGGAAAAGAAGTACTTGTGTTTTTTCAAGTTTCGTGGTGGTGTGTTCTATGTTCTGTTCAgtatgtgcttgttttttttgttctttcttttcttcattctcaGACTACTTCCTGAGGAGAAAGAGCCACCACAACCACATGCATGTTTGAGACatgattttgaatttgaatgagcatttccatttttccattacATTTCTCAGATCATTGAAAGCTAGCACACCCACTGTgtggttctgtttttttttttttcttttttttttttttcttttttaaaaataaagttttatttaaaagttttcatttttagcCCCCTCCTTAAAATGTCTTTGAATATCAGTGTTTATTTCCGTGTCATTGTAGACATTTATTACAATGTCCTTTTATTacagttgctttggataaagtTGTGAAAGATGTGAAGTGTAAATTCAGGTTGCAATAGCTGTTAGTTTGTTTTGGGGAAATTCTATTTTTAGGAAGAACGTGTGTCACTGTATGATGTAAGTAATCTTCATTTTGGAAGGAAAGAAATTGTGATGTCACTGGACTGTCTGACTTTTGTGTCCTTAATATAATACTCTTTAACTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249275 lncRNA downstream 12467 13034128 ~ 13034852 (-) True G210412
XR_003402901.2 lncRNA downstream 26641 12979965 ~ 13020678 (-) True LOC113527982
TU249260 lncRNA downstream 57198 12979970 ~ 12990121 (-) False LOC113527982
TU249259 lncRNA downstream 57286 12979970 ~ 12990033 (-) False LOC113527982
XR_004579372.1 lncRNA downstream 98202 12947310 ~ 12949117 (-) True LOC117598834
TU249295 lncRNA upstream 14016 13077999 ~ 13078945 (-) True G210427
TU249303 lncRNA upstream 31261 13095244 ~ 13095477 (-) True G210435
TU249304 lncRNA upstream 31537 13095520 ~ 13095737 (-) True G210436
TU249332 lncRNA upstream 107858 13171841 ~ 13172066 (-) True G210461
TU249463 lncRNA upstream 246550 13310533 ~ 13354585 (-) True G210570
XM_034309783.1 mRNA downstream 434393 12593577 ~ 12612926 (-) False pik3r6b
XM_034309784.1 mRNA downstream 437565 12593577 ~ 12609754 (-) False pik3r6b
XM_026916230.2 mRNA downstream 437565 12593577 ~ 12609754 (-) False pik3r6b
XM_026916229.2 mRNA downstream 437566 12593577 ~ 12609753 (-) True pik3r6b
XM_034309785.1 mRNA downstream 441271 12593577 ~ 12606048 (-) False pik3r6b
XM_026917297.2 mRNA upstream 32276 13096259 ~ 13104829 (-) True gcdhb
XM_026917298.2 mRNA upstream 32927 13096910 ~ 13104838 (-) False gcdhb
XM_026916922.2 mRNA upstream 146386 13210369 ~ 13220022 (-) False nfil3-2
XM_026916923.2 mRNA upstream 146386 13210369 ~ 13219073 (-) True nfil3-2
XM_026917090.2 mRNA upstream 159261 13223244 ~ 13226875 (-) True nfil3-6
trnas-aga_12 other downstream 220780 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 488106 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other downstream 488106 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other downstream 488106 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other downstream 488106 12549120 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 331483 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 940186 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 956265 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1423838 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1456294 14520277 ~ 14520975 (-) True G211151

Expression Profile